|Predicting essential components of signal transduction networks: a dynamic model of guard cell abscisic acid signaling|
S Li, SM Assmann, R Albert
PLoS biology 4 (10), e312, 2006
|Boolean network simulations for life scientists|
I Albert, J Thakar, S Li, R Zhang, R Albert
Source code for biology and medicine 3 (1), 16, 2008
|Common and unique elements of the ABA-regulated transcriptome of Arabidopsis guard cells|
RS Wang, S Pandey, S Li, TE Gookin, Z Zhao, R Albert, SM Assmann
BMC genomics 12 (1), 216, 2011
|Boolean modeling of transcriptome data reveals novel modes of heterotrimeric G‐protein action|
S Pandey, RS Wang, L Wilson, S Li, Z Zhao, TE Gookin, SM Assmann, ...
Molecular systems biology 6 (1), 2010
|High-Resolution Expression Map of the Arabidopsis Root Reveals Alternative Splicing and lincRNA Regulation|
S Li, M Yamada, X Han, U Ohler, PN Benfey
Developmental cell 39 (4), 508-522, 2016
|Obtaining and analysis of flanking sequences from T-DNA transformants of Arabidopsis|
G Qin, D Kang, Y Dong, Y Shen, L Zhang, X Deng, Y Zhang, S Li, N Chen, ...
Plant Science 165 (5), 941-949, 2003
|Paired-end analysis of transcription start sites in Arabidopsis reveals plant-specific promoter signatures|
T Morton, J Petricka, DL Corcoran, S Li, CM Winter, A Carda, PN Benfey, ...
The Plant Cell 26 (7), 2746-2760, 2014
|Integrated detection of natural antisense transcripts using strand-specific RNA sequencing data|
S Li, LM Liberman, N Mukherjee, PN Benfey, U Ohler
Genome research 23 (10), 1730-1739, 2013
|Multilevel regulation of abiotic stress responses in plants|
DC Haak, T Fukao, R Grene, Z Hua, R Ivanov, G Perrella, S Li
Frontiers in plant science 8, 1564, 2017
|Soil bacterial and fungal communities show distinct recovery patterns during forest ecosystem restoration|
S Sun, S Li, BN Avera, BD Strahm, BD Badgley
Appl. Environ. Microbiol. 83 (14), e00966-17, 2017
|Establishment of Expression in the SHORTROOT-SCARECROW Transcriptional Cascade through Opposing Activities of Both Activators and Repressors|
EE Sparks, C Drapek, A Gaudinier, S Li, M Ansariola, N Shen, ...
Developmental cell 39 (5), 585-596, 2016
|Antibiotics ameliorate lupus-like symptoms in mice|
Q Mu, VJ Tavella, JL Kirby, TE Cecere, M Chung, J Lee, S Li, SA Ahmed, ...
Scientific reports 7 (1), 13675, 2017
|Gene-sharing networks reveal organizing principles of transcriptomes in Arabidopsis and other multicellular organisms|
S Li, S Pandey, TE Gookin, Z Zhao, L Wilson, SM Assmann
The Plant Cell 24 (4), 1362-1378, 2012
|A machine learning approach to predict gene regulatory networks in seed development in Arabidopsis|
Y Ni, D Aghamirzaie, H Elmarakeby, E Collakova, S Li, R Grene, ...
Frontiers in Plant Science 7, 1936, 2016
|Identification of the RNA recognition element of the RBPMS family of RNA-binding proteins and their transcriptome-wide mRNA targets|
TA Farazi, CS Leonhardt, N Mukherjee, A Mihailovic, S Li, KEA Max, ...
Rna 20 (7), 1090-1102, 2014
|Framework for gradual progression of cell ontogeny in the Arabidopsis root meristem|
JR Wendrich, BK Möller, S Li, S Saiga, R Sozzani, PN Benfey, B De Rybel, ...
Proceedings of the National Academy of Sciences 114 (42), E8922-E8929, 2017
|Genome-wide association mapping of resistance to Phytophthora sojae in a soybean [Glycine max (L.) Merr.] germplasm panel from maturity groups IV and V|
J Qin, Q Song, A Shi, S Li, M Zhang, B Zhang
PloS one 12 (9), e0184613, 2017
|Character analysis of mining disturbance and reclamation trajectory in surface coal-mine area by time-series NDVI|
J Li, C Zipper, S Li, P Donovan, R Wynne, A Oliphant, Q Xia
Transactions of the Chinese Society of Agricultural Engineering 31 (16), 251-257, 2015
|CoSpliceNet: a framework for co-splicing network inference from transcriptomics data|
D Aghamirzaie, E Collakova, S Li, R Grene
BMC genomics 17 (1), 845, 2016
|Improved transcript isoform discovery using ORF graphs|
WH Majoros, N Lebeck, U Ohler, S Li
Bioinformatics 30 (14), 1958-1964, 2014