Marina Sirota
Marina Sirota
Associate Professor, Bakar Computational Health Sciences Institute, UCSF
Verified email at ucsf.edu
Title
Cited by
Cited by
Year
Evolution of genes and genomes on the Drosophila phylogeny
Drosophila 12 Genomes Consortium
Nature 450 (7167), 203, 2007
19282007
Ten years of pathway analysis: current approaches and outstanding challenges
P Khatri, M Sirota, AJ Butte
PLoS Comput Biol 8 (2), e1002375, 2012
12202012
Identifying a high fraction of the human genome to be under selective constraint using GERP++
EV Davydov, DL Goode, M Sirota, GM Cooper, A Sidow, S Batzoglou
PLoS Comput Biol 6 (12), e1001025, 2010
11272010
Discovery and preclinical validation of drug indications using compendia of public gene expression data
M Sirota, JT Dudley, J Kim, AP Chiang, AA Morgan, A Sweet-Cordero, ...
Science translational medicine 3 (96), 96ra77-96ra77, 2011
5952011
Systematic pan-cancer analysis of tumour purity
D Aran, M Sirota, AJ Butte
Nature communications 6 (1), 1-12, 2015
4432015
Computational repositioning of the anticonvulsant topiramate for inflammatory bowel disease
JT Dudley, M Sirota, M Shenoy, RK Pai, S Roedder, AP Chiang, ...
Science translational medicine 3 (96), 96ra76-96ra76, 2011
4372011
B cell exchange across the blood-brain barrier in multiple sclerosis
H von Büdingen, TC Kuo, M Sirota, CJ van Belle, L Apeltsin, J Glanville, ...
The Journal of Clinical Investigation, 2012
1742012
Immunoglobulin class-switched B cells form an active immune axis between CNS and periphery in multiple sclerosis
A Palanichamy, L Apeltsin, TC Kuo, M Sirota, S Wang, SJ Pitts, ...
Science translational medicine 6 (248), 248ra106-248ra106, 2014
1582014
Autoimmune disease classification by inverse association with SNP alleles
M Sirota, MA Schaub, S Batzoglou, WH Robinson, AJ Butte
PLoS Genet 5 (12), e1000792, 2009
1582009
Non-synonymous and synonymous coding SNPs show similar likelihood and effect size of human disease association
R Chen, EV Davydov, M Sirota, AJ Butte
PloS one 5 (10), e13574, 2010
1492010
Comprehensive analysis of normal adjacent to tumor transcriptomes
D Aran, R Camarda, J Odegaard, H Paik, B Oskotsky, G Krings, A Goga, ...
Nature communications 8 (1), 1-14, 2017
1412017
Expression-based genome-wide association study links the receptor CD44 in adipose tissue with type 2 diabetes
K Kodama, M Horikoshi, K Toda, S Yamada, K Hara, J Irie, M Sirota, ...
Proceedings of the National Academy of Sciences 109 (18), 7049-7054, 2012
1252012
CONTRAST: a discriminative, phylogeny-free approach to multiple informant de novogene prediction
SS Gross, CB Do, M Sirota, S Batzoglou
Genome biology 8 (12), R269, 2007
1182007
Cross-tissue analysis of gene and protein expression in normal and cancer tissues
I Kosti, N Jain, D Aran, AJ Butte, M Sirota
Scientific reports 6 (1), 1-16, 2016
872016
Reversal of cancer gene expression correlates with drug efficacy and reveals therapeutic targets
B Chen, L Ma, H Paik, M Sirota, W Wei, MS Chua, S So, AJ Butte
Nature communications 8 (1), 1-12, 2017
682017
Drug discovery in a multidimensional world: systems, patterns, and networks
JT Dudley, E Schadt, M Sirota, AJ Butte, E Ashley
Journal of cardiovascular translational research 3 (5), 438-447, 2010
652010
Environmental influences on reproductive health: the importance of chemical exposures
A Wang, A Padula, M Sirota, TJ Woodruff
Fertility and sterility 106 (4), 905-929, 2016
572016
Sex differences in disease risk from reported genome-wide association study findings
LY Liu, MA Schaub, M Sirota, AJ Butte
Human genetics 131 (3), 353-364, 2012
542012
Relating hepatocellular carcinoma tumor samples and cell lines using gene expression data in translational research
B Chen, M Sirota, H Fan-Minogue, D Hadley, AJ Butte
BMC medical genomics 8 (S2), S5, 2015
532015
Characteristics of drug combination therapy in oncology by analyzing clinical trial data on ClinicalTrials. gov
M Wu, M Sirota, AJ Butte, BIN Chen
Pacific Symposium on Biocomputing Co-Chairs, 68-79, 2014
452014
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Articles 1–20