Mattia Conte
Mattia Conte
UniversitÓ di Napoli "Federico II"
Verified email at na.infn.it
Title
Cited by
Cited by
Year
Polymer physics indicates chromatin folding variability across single-cells results from state degeneracy in phase separation
M Conte, L Fiorillo, S Bianco, AM Chiariello, A Esposito, M Nicodemi
Nature communications 11 (1), 1-13, 2020
172020
Promoter-proximal CTCF binding promotes distal enhancer-dependent gene activation
N Kubo, H Ishii, X Xiong, S Bianco, F Meitinger, R Hu, JD Hocker, ...
Nature structural & molecular biology 28 (2), 152-161, 2021
112021
A dynamic folded hairpin conformation is associated with α-globin activation in erythroid cells
AM Chiariello, S Bianco, AM Oudelaar, A Esposito, C Annunziatella, ...
Cell reports 30 (7), 2125-2135. e5, 2020
112020
Modeling single-molecule conformations of the HoxD region in mouse embryonic stem and cortical neuronal cells
S Bianco, C Annunziatella, G Andrey, AM Chiariello, A Esposito, L Fiorillo, ...
Cell reports 28 (6), 1574-1583. e4, 2019
82019
Comparison of the Hi-C, GAM and SPRITE methods using polymer models of chromatin
L Fiorillo, F Musella, M Conte, R Kempfer, AM Chiariello, S Bianco, ...
Nature Methods 18 (5), 482-490, 2021
62021
Computational approaches from polymer physics to investigate chromatin folding
S Bianco, AM Chiariello, M Conte, A Esposito, L Fiorillo, F Musella, ...
Current opinion in cell biology 64, 10-17, 2020
62020
A modern challenge of polymer physics: Novel ways to study, interpret, and reconstruct chromatin structure
L Fiorillo, S Bianco, A Esposito, M Conte, R Sciarretta, F Musella, ...
Wiley Interdisciplinary Reviews: Computational Molecular Science 10 (4), e1454, 2020
52020
CTCF Promotes Long-range Enhancer-promoter Interactions and Lineage-specific Gene Expression in Mammalian Cells
N Kubo, H Ishii, X Xiong, S Bianco, F Meitinger, R Hu, JD Hocker, ...
BioRxiv, 2020
52020
CTCF mediates dosage and sequence-context-dependent transcriptional insulation through formation of local chromatin domains
H Huang, Q Zhu, AP Jussila, Y Han, B Bintu, C Kern, M Conte, Y Zhang, ...
bioRxiv, 2020
42020
Inference of chromosome 3D structures from GAM data by a physics computational approach
L Fiorillo, S Bianco, AM Chiariello, M Barbieri, A Esposito, ...
Methods 181, 70-79, 2020
32020
Higher-order chromosome structures investigated by polymer physics in cellular morphogenesis and differentiation
A Esposito, AM Chiariello, M Conte, L Fiorillo, F Musella, R Sciarretta, ...
Journal of molecular biology 432 (3), 701-711, 2020
22020
Hybrid Machine Learning and Polymer Physics Approach to Investigate 3D Chromatin Structure
M Conte, A Esposito, L Fiorillo, C Annunziatella, A Corrado, F Musella, ...
European Conference on Parallel Processing, 572-582, 2019
12019
Efficient computational implementation of polymer physics models to explore chromatin structure
M Conte, A Esposito, L Fiorillo, R Campanile, C Annunziatella, A Corrado, ...
International Journal of Parallel, Emergent and Distributed Systems, 1-12, 2019
12019
Understanding chromatin structure: Efficient computational implementation of polymer physics models
S Bianco, C Annunziatella, A Esposito, L Fiorillo, M Conte, R Campanile, ...
European Conference on Parallel Processing, 680-691, 2018
12018
CTCF mediates dosage-and sequence-context-dependent transcriptional insulation by forming local chromatin domains
H Huang, Q Zhu, A Jussila, Y Han, B Bintu, C Kern, M Conte, Y Zhang, ...
Nature Genetics, 1-11, 2021
2021
Physical mechanisms of chromatin spatial organization
AM Chiariello, S Bianco, A Esposito, L Fiorillo, M Conte, E Irani, F Musella, ...
The FEBS Journal, 2021
2021
Polymer physics and machine learning reveal a combinatorial code linking chromatin 3D architecture to 1D epigenetics
A Esposito, S Bianco, AM Chiariello, A Abraham, L Fiorillo, M Conte, ...
bioRxiv, 2021
2021
Divergent transcription of the Nkx2-5 locus generates two enhancer RNAs with opposing functions
I Salamon, S Serio, S Bianco, C Pagiatakis, S Crasto, AM Chiariello, ...
Iscience 23 (9), 101539, 2020
2020
Analysis of Genome Architecture Mapping Data with a Machine Learning and Polymer-Physics-Based Tool
L Fiorillo, M Conte, A Esposito, F Musella, F Flora, AM Chiariello, ...
Euro-Par 2020: Parallel Processing Workshops 12480, 321, 2020
2020
Chromatin folding variability across single-cells results from state degeneracy in phase-separation
M Conte, L Fiorillo, S Bianco, AM Chiariello, A Esposito, M Nicodemi
bioRxiv, 2020
2020
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