|Design of a novel globular protein fold with atomic-level accuracy|
B Kuhlman, G Dantas, GC Ireton, G Varani, BL Stoddard, D Baker
science 302 (5649), 1364-1368, 2003
|ROSETTA3: an object-oriented software suite for the simulation and design of macromolecules|
A Leaver-Fay, M Tyka, SM Lewis, OF Lange, J Thompson, R Jacak, ...
Methods in enzymology 487, 545-574, 2011
|Protein–protein docking with simultaneous optimization of rigid-body displacement and side-chain conformations|
JJ Gray, S Moughon, C Wang, O Schueler-Furman, B Kuhlman, CA Rohl, ...
Journal of molecular biology 331 (1), 281-299, 2003
|A genetically encoded photoactivatable Rac controls the motility of living cells|
YI Wu, D Frey, OI Lungu, A Jaehrig, I Schlichting, B Kuhlman, KM Hahn
Nature 461 (7260), 104, 2009
|Native protein sequences are close to optimal for their structures|
B Kuhlman, D Baker
Proceedings of the National Academy of Sciences 97 (19), 10383-10388, 2000
|A large scale test of computational protein design: folding and stability of nine completely redesigned globular proteins|
G Dantas, B Kuhlman, D Callender, M Wong, D Baker
Journal of molecular biology 332 (2), 449-460, 2003
|Labelling and optical erasure of synaptic memory traces in the motor cortex|
A Hayashi-Takagi, S Yagishita, M Nakamura, F Shirai, YI Wu, ...
Nature 525 (7569), 333, 2015
|Computer-based redesign of a protein folding pathway|
S Nauli, B Kuhlman, D Baker
Nature structural & molecular biology 8 (7), 602, 2001
|Mice fed a lipogenic methionine-choline-deficient diet develop hypermetabolism coincident with hepatic suppression of SCD-1|
G Rizki, L Arnaboldi, B Gabrielli, J Yan, GS Lee, RK Ng, SM Turner, ...
Journal of lipid research 47 (10), 2280-2290, 2006
|Engineering an improved light-induced dimer (iLID) for controlling the localization and activity of signaling proteins|
G Guntas, RA Hallett, SP Zimmerman, T Williams, H Yumerefendi, ...
Proceedings of the National Academy of Sciences 112 (1), 112-117, 2015
|An improved protein decoy set for testing energy functions for protein structure prediction|
J Tsai, R Bonneau, AV Morozov, B Kuhlman, CA Rohl, D Baker
Proteins: Structure, Function, and Bioinformatics: Structure, Function, and …, 2003
|Serverification of molecular modeling applications: the Rosetta Online Server that Includes Everyone (ROSIE)|
S Lyskov, FC Chou, SÓ Conchúir, BS Der, K Drew, D Kuroda, J Xu, ...
PloS one 8 (5), e63906, 2013
|RosettaDesign server for protein design|
Y Liu, B Kuhlman
Nucleic acids research 34 (suppl_2), W235-W238, 2006
|The Rosetta all-atom energy function for macromolecular modeling and design|
RF Alford, A Leaver-Fay, JR Jeliazkov, MJ O’Meara, FP DiMaio, H Park, ...
Journal of chemical theory and computation 13 (6), 3031-3048, 2017
|E2 conjugating enzymes must disengage from their E1 enzymes before E3-dependent ubiquitin and ubiquitin-like transfer|
ZM Eletr, DT Huang, DM Duda, BA Schulman, B Kuhlman
Nature structural & molecular biology 12 (10), 933, 2005
|Computational design of a single amino acid sequence that can switch between two distinct protein folds|
XI Ambroggio, B Kuhlman
Journal of the American Chemical Society 128 (4), 1154-1161, 2006
|Scientific benchmarks for guiding macromolecular energy function improvement|
A Leaver-Fay, MJ O'Meara, M Tyka, R Jacak, Y Song, EH Kellogg, ...
Methods in enzymology 523, 109-143, 2013
|Generation of bispecific IgG antibodies by structure-based design of an orthogonal Fab interface|
SM Lewis, X Wu, A Pustilnik, A Sereno, F Huang, HL Rick, G Guntas, ...
Nature biotechnology 32 (2), 191, 2014
|A “solvated rotamer” approach to modeling water‐mediated hydrogen bonds at protein–protein interfaces|
L Jiang, B Kuhlman, T Kortemme, D Baker
PROTEINS: structure, function, and bioinformatics 58 (4), 893-904, 2005
|p K a values and the pH dependent stability of the N-terminal domain of L9 as probes of electrostatic interactions in the denatured state. Differentiation between local and …|
B Kuhlman, DL Luisi, P Young, DP Raleigh
Biochemistry 38 (15), 4896-4903, 1999