Follow
Elena Rivas
Elena Rivas
Molecular and Cell Biology, Harvard University
Verified email at fas.harvard.edu - Homepage
Title
Cited by
Cited by
Year
A dynamic programming algorithm for RNA structure prediction including pseudoknots
E Rivas, SR Eddy
Journal of molecular biology 285 (5), 2053-2068, 1999
10151999
Rfam 13.0: shifting to a genome-centric resource for non-coding RNA families
I Kalvari, J Argasinska, N Quinones-Olvera, EP Nawrocki, E Rivas, ...
Nucleic acids research 46 (D1), D335-D342, 2018
8942018
Noncoding RNA gene detection using comparative sequence analysis
E Rivas, SR Eddy
BMC bioinformatics 2, 1-19, 2001
6652001
Computational identification of noncoding RNAs in E. coli by comparative genomics
E Rivas, RJ Klein, TA Jones, SR Eddy
Current biology 11 (17), 1369-1373, 2001
5582001
Rfam 14: expanded coverage of metagenomic, viral and microRNA families
I Kalvari, EP Nawrocki, N Ontiveros-Palacios, J Argasinska, K Lamkiewicz, ...
Nucleic Acids Research 49 (D1), D192-D200, 2021
5152021
Secondary structure alone is generally not statistically significant for the detection of noncoding RNAs
E Rivas, SR Eddy
Bioinformatics 16 (7), 583-605, 2000
3932000
Location theory
W Alonso
Regional development and planning, 78-106, 1964
3271964
A statistical test for conserved RNA structure shows lack of evidence for structure in lncRNAs
E Rivas, J Clements, SR Eddy
Nature methods 14 (1), 45-48, 2017
3062017
The language of RNA: a formal grammar that includes pseudoknots
E Rivas, SR Eddy
Bioinformatics 16 (4), 334-340, 2000
2512000
RNAcentral: a hub of information for non-coding RNA sequences
Nucleic Acids Research 47 (D1), D221-D229, 2019
2192019
A range of complex probabilistic models for RNA secondary structure prediction that includes the nearest-neighbor model and more
E Rivas, R Lang, SR Eddy
RNA 18 (2), 193-212, 2012
1312012
Identification of differentially expressed small non‐coding RNAs in the legume endosymbiont Sinorhizobium meliloti by comparative genomics
C Del Val, E Rivas, O Torres‐Quesada, N Toro, JI Jiménez‐Zurdo
Molecular microbiology 66 (5), 1080-1091, 2007
1292007
Evolutionary models for insertions and deletions in a probabilistic modeling framework
E Rivas
BMC bioinformatics 6, 1-30, 2005
792005
Probabilistic phylogenetic inference with insertions and deletions
E Rivas, SR Eddy
PLoS computational biology 4 (9), e1000172, 2008
762008
Estimating the power of sequence covariation for detecting conserved RNA structure
E Rivas, J Clements, SR Eddy
Bioinformatics 36 (10), 3072-3076, 2020
692020
RNA structure prediction using positive and negative evolutionary information
E Rivas
PLoS computational biology 16 (10), e1008387, 2020
582020
The four ingredients of single-sequence RNA secondary structure prediction. A unifying perspective
E Rivas
RNA biology 10 (7), 1185-1196, 2013
582013
Absence of chiral fermions in the Eichten-Preskill model
MFL Golterman, DN Petcher, E Rivas
Nuclear Physics B 395 (3), 596-622, 1993
541993
Evolutionary conservation of RNA sequence and structure
E Rivas
Wiley Interdisciplinary Reviews: RNA 12 (5), e1649, 2021
372021
Parameterizing sequence alignment with an explicit evolutionary model
E Rivas, SR Eddy
BMC bioinformatics 16, 1-23, 2015
312015
The system can't perform the operation now. Try again later.
Articles 1–20