| Gene-centric metagenomics of the fiber-adherent bovine rumen microbiome reveals forage specific glycoside hydrolases JM Brulc, DA Antonopoulos, MEB Miller, MK Wilson, AC Yannarell, ... Proceedings of the National Academy of Sciences 106 (6), 1948-1953, 2009 | 666 | 2009 |
| Bacterial diversity in the oral cavity of 10 healthy individuals EM Bik, CD Long, GC Armitage, P Loomer, J Emerson, EF Mongodin, ... The ISME journal 4 (8), 962-974, 2010 | 555 | 2010 |
| De novo metagenomic assembly reveals abundant novel major lineage of Archaea in hypersaline microbial communities P Narasingarao, S Podell, JA Ugalde, C Brochier-Armanet, JB Emerson, ... The ISME journal 6 (1), 81-93, 2012 | 290 | 2012 |
| Seasonal variability in bacterial and fungal diversity of the near-surface atmosphere RM Bowers, N Clements, JB Emerson, C Wiedinmyer, MP Hannigan, ... Environmental science & technology 47 (21), 12097-12106, 2013 | 247 | 2013 |
| Secrets of soil survival revealed by the genome sequence of Arthrobacter aurescens TC1 EF Mongodin, N Shapir, SC Daugherty, RT DeBoy, JB Emerson, ... PLoS Genet 2 (12), e214, 2006 | 231 | 2006 |
| Schrödinger’s microbes: tools for distinguishing the living from the dead in microbial ecosystems JB Emerson, RI Adams, CMB Román, B Brooks, DA Coil, K Dahlhausen, ... Microbiome 5 (1), 1-23, 2017 | 192 | 2017 |
| Insights into plant cell wall degradation from the genome sequence of the soil bacterium Cellvibrio japonicus RT DeBoy, EF Mongodin, DE Fouts, LE Tailford, H Khouri, JB Emerson, ... Journal of bacteriology 190 (15), 5455-5463, 2008 | 172 | 2008 |
| Genome-centric view of carbon processing in thawing permafrost BJ Woodcroft, CM Singleton, JA Boyd, PN Evans, JB Emerson, ... Nature 560 (7716), 49-54, 2018 | 114 | 2018 |
| Genomic resolution of a cold subsurface aquifer community provides metabolic insights for novel microbes adapted to high CO2 concentrations AJ Probst, CJ Castelle, A Singh, CT Brown, K Anantharaman, I Sharon, ... Environmental microbiology 19 (2), 459-474, 2017 | 114 | 2017 |
| Host-linked soil viral ecology along a permafrost thaw gradient JB Emerson, S Roux, JR Brum, B Bolduc, BJ Woodcroft, HB Jang, ... Nature microbiology 3 (8), 870-880, 2018 | 113 | 2018 |
| Minimum information about an uncultivated virus genome (MIUViG) S Roux, EM Adriaenssens, BE Dutilh, EV Koonin, AM Kropinski, ... Nature biotechnology 37 (1), 29-37, 2019 | 107 | 2019 |
| Differential depth distribution of microbial function and putative symbionts through sediment-hosted aquifers in the deep terrestrial subsurface AJ Probst, B Ladd, JK Jarett, DE Geller-McGrath, CMK Sieber, ... Nature microbiology 3 (3), 328-336, 2018 | 103 | 2018 |
| Benchmarking viromics: an in silico evaluation of metagenome-enabled estimates of viral community composition and diversity S Roux, JB Emerson, EA Eloe-Fadrosh, MB Sullivan PeerJ 5, e3817, 2017 | 98 | 2017 |
| Virus-host and CRISPR dynamics in Archaea-dominated hypersaline Lake Tyrrell, Victoria, Australia JB Emerson, K Andrade, BC Thomas, A Norman, EE Allen, KB Heidelberg, ... Archaea 2013, 2013 | 80 | 2013 |
| Dynamic viral populations in hypersaline systems as revealed by metagenomic assembly JB Emerson, BC Thomas, K Andrade, EE Allen, KB Heidelberg, ... Applied and environmental microbiology 78 (17), 6309-6320, 2012 | 75 | 2012 |
| Impacts of flood damage on airborne bacteria and fungi in homes after the 2013 Colorado Front Range flood JB Emerson, PB Keady, TE Brewer, N Clements, EE Morgan, J Awerbuch, ... Environmental science & technology 49 (5), 2675-2684, 2015 | 73 | 2015 |
| Metagenomic analysis of a high carbon dioxide subsurface microbial community populated by chemolithoautotrophs and bacteria and archaea from candidate phyla JB Emerson, BC Thomas, W Alvarez, JF Banfield Environmental microbiology 18 (6), 1686-1703, 2016 | 72 | 2016 |
| Biology of a widespread uncultivated archaeon that contributes to carbon fixation in the subsurface AJ Probst, T Weinmaier, K Raymann, A Perras, JB Emerson, T Rattei, ... Nature communications 5 (1), 1-13, 2014 | 70 | 2014 |
| Chromosome evolution in the Thermotogales: large-scale inversions and strain diversification of CRISPR sequences RT DeBoy, EF Mongodin, JB Emerson, KE Nelson Journal of bacteriology 188 (7), 2364-2374, 2006 | 65 | 2006 |
| Seasonal fluctuations in ionic concentrations drive microbial succession in a hypersaline lake community S Podell, JB Emerson, CM Jones, JA Ugalde, S Welch, KB Heidelberg, ... The ISME journal 8 (5), 979-990, 2014 | 61 | 2014 |
