| deepTools2: a next generation web server for deep-sequencing data analysis F Ramírez, DP Ryan, B Grüning, V Bhardwaj, F Kilpert, AS Richter, ... Nucleic acids research 44 (Web Server issue), W160, 2016 | 5315 | 2016 |
| deepTools: a flexible platform for exploring deep-sequencing data F Ramírez, F Dündar, S Diehl, BA Grüning, T Manke Nucleic acids research 42 (W1), W187-W191, 2014 | 2497 | 2014 |
| TOX is a critical regulator of tumour-specific T cell differentiation AC Scott, F Dündar, P Zumbo, SS Chandran, CA Klebanoff, M Shakiba, ... Nature 571 (7764), 270-274, 2019 | 802 | 2019 |
| The NSL Complex Regulates Housekeeping Genes in Drosophila KC Lam, F Mühlpfordt, JM Vaquerizas, SJ Raja, H Holz, NM Luscombe, ... PLoS genetics 8 (6), e1002736, 2012 | 107 | 2012 |
| An autoimmune stem-like CD8 T cell population drives type 1 diabetes SV Gearty, F Dündar, P Zumbo, G Espinosa-Carrasco, M Shakiba, ... Nature 602 (7895), 156-161, 2022 | 103 | 2022 |
| Genome-scale screens identify JNK–JUN signaling as a barrier for pluripotency exit and endoderm differentiation QV Li, G Dixon, N Verma, BP Rosen, M Gordillo, R Luo, C Xu, Q Wang, ... Nature genetics 51 (6), 999-1010, 2019 | 100 | 2019 |
| MOF-associated complexes ensure stem cell identity and Xist repression T Chelmicki, F Dündar, MJ Turley, T Khanam, T Aktas, F Ramírez, ... Elife 3, e02024, 2014 | 87 | 2014 |
| TCR signal strength defines distinct mechanisms of T cell dysfunction and cancer evasion M Shakiba, P Zumbo, G Espinosa-Carrasco, L Menocal, F Dündar, ... Journal of Experimental Medicine 219 (2), e20201966, 2021 | 83 | 2021 |
| Schizophrenia is defined by cell-specific neuropathology and multiple neurodevelopmental mechanisms in patient-derived cerebral organoids M Notaras, A Lodhi, F Dündar, P Collier, NM Sayles, H Tilgner, ... Molecular psychiatry 27 (3), 1416-1434, 2022 | 70 | 2022 |
| Immunogenicity and therapeutic targeting of a public neoantigen derived from mutated PIK3CA SS Chandran, J Ma, MG Klatt, F Dündar, C Bandlamudi, P Razavi, ... Nature Medicine 28 (5), 946-957, 2022 | 61 | 2022 |
| Volume regulation of murine T lymphocytes relies on voltage-dependent and two-pore domain potassium channels N Bobak, S Bittner, J Andronic, S Hartmann, F Mühlpfordt, ... Biochimica et Biophysica Acta (BBA)-Biomembranes 1808 (8), 2036-2044, 2011 | 57 | 2011 |
| Introduction to differential gene expression analysis using RNA-seq F Dündar, L Skrabanek, P Zumbo Applied Bioinformatics Core/Weill Cornell Medical College, 1-67, 2015 | 49 | 2015 |
| Functional interplay between MSL1 and CDK7 controls RNA polymerase II Ser5 phosphorylation S Chlamydas, H Holz, M Samata, T Chelmicki, P Georgiev, V Pelechano, ... Nature structural & molecular biology 23 (6), 580-589, 2016 | 27 | 2016 |
| Hallmarks of CD8+ T cell dysfunction are established within hours of tumor antigen encounter before cell division MW Rudloff, P Zumbo, NR Favret, JJ Roetman, CR Detrés Román, ... Nature Immunology 24 (9), 1527-1539, 2023 | 17 | 2023 |
| SARS CoV-2 mRNA vaccination exposes latent HIV to Nef-specific CD8+ T-cells EM Stevenson, S Terry, D Copertino, L Leyre, A Danesh, J Weiler, ... Nature communications 13 (1), 1-15, 2022 | 17 | 2022 |
| A beta cell subset with enhanced insulin secretion and glucose metabolism is reduced in type 2 diabetes A Rubio-Navarro, N Gómez-Banoy, L Stoll, F Dündar, AM Mawla, L Ma, ... Nature Cell Biology 25 (4), 565-578, 2023 | 16 | 2023 |
| Activation of a transient progenitor state in the epicardium is required for zebrafish heart regeneration Y Xia, S Duca, B Perder, F Dündar, P Zumbo, M Qiu, J Yao, Y Cao, ... Nature Communications 13 (1), 7704, 2022 | 16 | 2022 |
| Epsilon toxin–producing Clostridium perfringens colonize the multiple sclerosis gut microbiome overcoming CNS immune privilege Y Ma, D Sannino, JR Linden, S Haigh, B Zhao, JB Grigg, P Zumbo, ... The Journal of Clinical Investigation 133 (9), 2023 | 14 | 2023 |
| Selective BCL-XL Antagonists Eliminate Infected Cells from a Primary-Cell Model of HIV Latency but Not from Ex Vivo Reservoirs Y Ren, SH Huang, AB Macedo, AR Ward, WDC Alberto, T Klevorn, ... Journal of Virology 95 (15), e02425-20, 2021 | 12 | 2021 |
| Epigenomically bistable regions across neuron-specific genes govern neuron eligibility to a coding ensemble in the Hippocampus SC Odell, F Taki, SL Klein, RJ Chen, OB Levine, MJ Skelly, A Nabila, ... Cell reports 31 (12), 107789, 2020 | 8 | 2020 |
Paul ZumboSenior Staff Associate of Computational Genomics, Weill Cornell Medical CollegeVerified email at med.cornell.edu
