| Normalization approaches for removing systematic biases associated with mass spectrometry and label-free proteomics SJ Callister, RC Barry, JN Adkins, ET Johnson, W Qian, ... Journal of proteome research 5 (2), 277-286, 2006 | 336 | 2006 |
| Review, evaluation, and discussion of the challenges of missing value imputation for mass spectrometry-based label-free global proteomics BJM Webb-Robertson, HK Wiberg, MM Matzke, JN Brown, J Wang, ... Journal of proteome research 14 (5), 1993-2001, 2015 | 168 | 2015 |
| Mechanisms of severe acute respiratory syndrome coronavirus-induced acute lung injury LE Gralinski, A Bankhead, S Jeng, VD Menachery, S Proll, SE Belisle, ... MBio 4 (4), 2013 | 164 | 2013 |
| Pathogenic influenza viruses and coronaviruses utilize similar and contrasting approaches to control interferon-stimulated gene responses VD Menachery, AJ Eisfeld, A Schäfer, L Josset, AC Sims, S Proll, S Fan, ... MBio 5 (3), 2014 | 159 | 2014 |
| Challenges in biomarker discovery: combining expert insights with statistical analysis of complex omics data JE McDermott, J Wang, H Mitchell, BJ Webb-Robertson, R Hafen, ... Expert opinion on medical diagnostics 7 (1), 37-51, 2013 | 152 | 2013 |
| Quantitative proteomics analysis of adsorbed plasma proteins classifies nanoparticles with different surface properties and size H Zhang, KE Burnum, ML Luna, BO Petritis, JS Kim, WJ Qian, RJ Moore, ... Proteomics 11 (23), 4569-4577, 2011 | 126 | 2011 |
| Comparative proteomics and pulmonary toxicity of instilled single-walled carbon nanotubes, crocidolite asbestos, and ultrafine carbon black in mice JG Teeguarden, BJ Webb-Robertson, KM Waters, AR Murray, ER Kisin, ... Toxicological Sciences 120 (1), 123-135, 2011 | 111 | 2011 |
| A support vector machine model for the prediction of proteotypic peptides for accurate mass and time proteomics BJM Webb-Robertson, WR Cannon, CS Oehmen, AR Shah, ... Bioinformatics 26 (13), 1677-1683, 2010 | 100 | 2010 |
| Release of severe acute respiratory syndrome coronavirus nuclear import block enhances host transcription in human lung cells AC Sims, SC Tilton, VD Menachery, LE Gralinski, A Schäfer, MM Matzke, ... Journal of virology 87 (7), 3885-3902, 2013 | 99 | 2013 |
| Computational methods for mass spectrometry proteomics I Eidhammer, K Flikka, L Martens, SO Mikalsen John Wiley & Sons, 2007 | 97 | 2007 |
| MPLEx: a robust and universal protocol for single-sample integrative proteomic, metabolomic, and lipidomic analyses ES Nakayasu, CD Nicora, AC Sims, KE Burnum-Johnson, YM Kim, ... MSystems 1 (3), 2016 | 93 | 2016 |
| The undiagnosed diseases network: accelerating discovery about health and disease RB Ramoni, JJ Mulvihill, DR Adams, P Allard, EA Ashley, JA Bernstein, ... The American Journal of Human Genetics 100 (2), 185-192, 2017 | 92 | 2017 |
| MARRVEL: integration of human and model organism genetic resources to facilitate functional annotation of the human genome J Wang, R Al-Ouran, Y Hu, SY Kim, YW Wan, MF Wangler, S Yamamoto, ... The American Journal of Human Genetics 100 (6), 843-853, 2017 | 91 | 2017 |
| MERS-CoV and H5N1 influenza virus antagonize antigen presentation by altering the epigenetic landscape VD Menachery, A Schäfer, KE Burnum-Johnson, HD Mitchell, AJ Eisfeld, ... Proceedings of the National Academy of Sciences 115 (5), E1012-E1021, 2018 | 85 | 2018 |
| A comparative analysis of computational approaches to relative protein quantification using peptide peak intensities in label‐free LC‐MS proteomics experiments MM Matzke, JN Brown, MA Gritsenko, TO Metz, JG Pounds, KD Rodland, ... Proteomics 13 (3-4), 493-503, 2013 | 78 | 2013 |
| Combined statistical analyses of peptide intensities and peptide occurrences improves identification of significant peptides from MS-based proteomics data BJM Webb-Robertson, LA McCue, KM Waters, MM Matzke, JM Jacobs, ... Journal of proteome research 9 (11), 5748-5756, 2010 | 75 | 2010 |
| Improved quality control processing of peptide-centric LC-MS proteomics data MM Matzke, KM Waters, TO Metz, JM Jacobs, AC Sims, RS Baric, ... Bioinformatics 27 (20), 2866-2872, 2011 | 72 | 2011 |
| 1H Nuclear Magnetic Resonance Metabolomics Analysis Identifies Novel Urinary Biomarkers for Lung Function JL McClay, DE Adkins, NG Isern, TM O’Connell, JB Wooten, BK Zedler, ... Journal of proteome research 9 (6), 3083-3090, 2010 | 72 | 2010 |
| A statistical selection strategy for normalization procedures in LC‐MS proteomics experiments through dataset‐dependent ranking of normalization scaling factors BJM Webb‐Robertson, MM Matzke, JM Jacobs, JG Pounds, KM Waters Proteomics 11 (24), 4736-4741, 2011 | 70 | 2011 |
| A study of spectral integration and normalization in NMR-based metabonomic analyses BJM Webb-Robertson, DF Lowry, KH Jarman, SJ Harbo, QR Meng, ... Journal of pharmaceutical and biomedical analysis 39 (3-4), 830-836, 2005 | 67 | 2005 |
