Alexander Schönhuth
Alexander Schönhuth
Senior Researcher, Centrum Wiskunde & Informatica, Amsterdam
Verified email at - Homepage
Cited by
Cited by
Whole-genome sequence variation, population structure and demographic history of the Dutch population
LC Francioli, A Menelaou, SL Pulit, F Van Dijk, PF Palamara, CC Elbers, ...
Nature genetics 46 (8), 818, 2014
Using hidden Markov models to analyze gene expression time course data
A Schliep, A Schönhuth, C Steinhoff
Bioinformatics 19 (suppl_1), i255-i263, 2003
Genome-wide patterns and properties of de novo mutations in humans
LC Francioli, PP Polak, A Koren, A Menelaou, S Chun, I Renkens, ...
Nature genetics 47 (7), 822, 2015
Computational pan-genomics: status, promises and challenges
Briefings in bioinformatics 19 (1), 118-135, 2018
ProClust: improved clustering of protein sequences with an extended graph-based approach
P Pipenbacher, A Schliep, S Schneckener, A Schönhuth, D Schomburg, ...
Bioinformatics 18 (suppl_2), S182-S191, 2002
Analyzing gene expression time-courses
A Schliep, IG Costa, C Steinhoff, A Schonhuth
IEEE/ACM Transactions on computational biology and bioinformatics 2 (3), 179-193, 2005
Characteristics of de novo structural changes in the human genome
WP Kloosterman, LC Francioli, F Hormozdiari, T Marschall, JY Hehir-Kwa, ...
Genome research 25 (6), 792-801, 2015
Improved imputation quality of low-frequency and rare variants in European samples using the ‘Genome of The Netherlands’
P Deelen, A Menelaou, EM Van Leeuwen, A Kanterakis, F Van Dijk, ...
European Journal of Human Genetics 22 (11), 1321-1326, 2014
WhatsHap: Weighted Haplotype Assembly for Future-Generation Sequencing Reads
M Patterson, T Marschall, N Pisanti, L Van Iersel, L Stougie, GW Klau, ...
Journal of Computational Biology 22 (6), 498-509, 2015
CLEVER: Clique-Enumerating Variant Finder
T Marschall, I Costa, S Canzar, M Bauer, G Klau, A Schliep, A Schönhuth
Bioinformatics 28 (22), 2875-2882, 2012
Viral quasispecies assembly via maximal clique enumeration.
A Töpfer, T Marschall, RA Bull, F Luciani, A Schönhuth, N Beerenwinkel
PLoS Computational Biology 10 (3), e1003515, 2014
Inferring cancer subnetwork markers using density-constrained biclustering
P Dao, R Colak, R Salari, F Moser, E Davicioni, A Schönhuth, M Ester
Bioinformatics 26 (18), i625-i631, 2010
Discovering motifs that induce sequencing errors
M Allhoff, A Schönhuth, M Martin, IG Costa, S Rahmann, T Marschall
BMC bioinformatics 14 (5), S1, 2013
A high-quality human reference panel reveals the complexity and distribution of genomic structural variants
JY Hehir-Kwa, T Marschall, WP Kloosterman, LC Francioli, JA Baaijens, ...
Nature communications 7 (1), 1-10, 2016
MATE-CLEVER: Mendelian-inheritance-aware discovery and genotyping of midsize and long indels
T Marschall, I Hajirasouliha, A Schönhuth
Bioinformatics 29 (24), 3143-3150, 2013
Robust inference of groups in gene expression time-courses using mixtures of HMMs
A Schliep, C Steinhoff, A Schönhuth
Bioinformatics 20 (suppl_1), i283-i289, 2004
Leveraging distant relatedness to quantify human mutation and gene-conversion rates
PF Palamara, LC Francioli, PR Wilton, G Genovese, A Gusev, ...
The American Journal of Human Genetics 97 (6), 775-789, 2015
Population-specific genotype imputations using minimac or IMPUTE2
EM Van Leeuwen, A Kanterakis, P Deelen, MV Kattenberg, A Abdellaoui, ...
Nature protocols 10 (9), 1285, 2015
Constrained mixture estimation for analysis and robust classification of clinical time series
IG Costa, A Schönhuth, C Hafemeister, A Schliep
Bioinformatics 25 (12), i6-i14, 2009
A fractional programming approach to efficient DNA melting temperature calculation
M Leber, L Kaderali, A Schönhuth, R Schrader
Bioinformatics 21 (10), 2375-2382, 2005
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