| SNP calling from RNA-seq data without a reference genome: identification, quantification, differential analysis and impact on the protein sequence H Lopez-Maestre, L Brinza, C Marchet, J Kielbassa, S Bastien, ... Nucleic Acids Research 44 (19), e148-e148, 2016 | 49 | 2016 |
| A resource-frugal probabilistic dictionary and applications in bioinformatics C Marchet, L Lecompte, A Limasset, L Bittner, P Peterlongo Discrete Applied Mathematics 274, 92-102, 2020 | 21* | 2020 |
| Complementarity of assembly-first and mapping-first approaches for alternative splicing annotation and differential analysis from RNAseq data C Benoit-Pilven, C Marchet, E Chautard, L Lima, MP Lambert, ... Scientific reports 8 (1), 1-13, 2018 | 17* | 2018 |
| De novo clustering of long reads by gene from transcriptomics data C Marchet, L Lecompte, CD Silva, C Cruaud, JM Aury, J Nicolas, ... Nucleic acids research 47 (1), e2-e2, 2019 | 15* | 2019 |
| Playing hide and seek with repeats in local and global de novo transcriptome assembly of short RNA-seq reads L Lima, B Sinaimeri, G Sacomoto, H Lopez-Maestre, C Marchet, V Miele, ... Algorithms for Molecular Biology 12 (1), 2, 2017 | 14* | 2017 |
| Comparative assessment of long-read error correction software applied to Nanopore RNA-sequencing data L Lima, C Marchet, S Caboche, C Da Silva, B Istace, JM Aury, H Touzet, ... Briefings in Bioinformatics, 2019 | 9* | 2019 |
| A de novo approach to disentangle partner identity and function in holobiont systems A Meng, C Marchet, E Corre, P Peterlongo, A Alberti, C Da Silva, ... Microbiome 6 (1), 105, 2018 | 8 | 2018 |
| ELECTOR: Evaluator for long reads correction methods C Marchet, P Morisse, L Lecompte, A Lefebvre, T Lecroq, P Peterlongo, ... NAR Genomics and Bioinformatics 2 (1), lqz015, 2020 | 6 | 2020 |
| Data structures based on k-mers for querying large collections of sequencing datasets C Marchet, C Boucher, SJ Puglisi, P Medvedev, M Salson, R Chikhi bioRxiv, 866756, 2019 | 6 | 2019 |
| Colib’read on galaxy: a tools suite dedicated to biological information extraction from raw NGS reads Y Le Bras, O Collin, C Monjeaud, V Lacroix, É Rivals, C Lemaitre, V Miele, ... GigaScience 5 (1), s13742-015-0105-2, 2016 | 6 | 2016 |
| CONSENT: Scalable long read self-correction and assembly polishing with multiple sequence alignment P Morisse, C Marchet, A Limasset, T Lecroq, A Lefebvre BioRxiv, 546630, 2020 | 5 | 2020 |
| Indexing De Bruijn graphs with minimizers C Marchet, M Kerbiriou, A Limasset Recomb seq, 2019 | 4 | 2019 |
| REINDEER: efficient indexing of k-mer presence and abundance in sequencing datasets C Marchet, Z Iqbal, D Gautheret, M Salson, R Chikhi bioRxiv, 2020 | 2 | 2020 |
| From reads to transcripts: de novo methods for the analysis of transcriptome second and third generation sequencing. C Marchet Université de Rennes 1, 2018 | 1 | 2018 |
| Read correction for non-uniform coverages C Marchet, Y Dufresne, A Limasset bioRxiv, 673624, 2019 | | 2019 |
| CARNAC-LR: Clustering coefficient-based Acquisition of RNA Communities in Long Reads C Marchet, L Lecompte, C Da Silva, C Cruaud, JM Aury, J Nicolas, ... JOBIM, 2018 | | 2018 |
| ELECTOR: EvaLuation of Error Correction Tools for lOng Reads L Lecompte, C Marchet, P Morisse, A Limasset, P Peterlongo, A Lefebvre, ... JOBIM, 2018 | | 2018 |
| Simulation of RNA sequencIng with Oxford Nanopore Technologies C Marchet, L Lima JOBIM, 2018 | | 2018 |
| The’kissDE’package C Benoit-Pilven, C Marchet, J Kielbassa, A Cologne, A Siberchicot, ... | | 2018 |
| CARNAC-LR: De novo Clustering of Gene Expressed Variants in Transcriptomic Long Reads Data Sets C Marchet, L Lecompte, C Da Silva, C Cruaud, JM Aury, J Nicolas, ... RECOMB-seq, 2018 | | 2018 |
Pierre PeterlongoInriaVerified email at inria.fr
