Camille Marchet
Camille Marchet
Post-Doc BONSAI CRISTAL (Lille, France)
Verified email at univ-lille.fr - Homepage
Title
Cited by
Cited by
Year
SNP calling from RNA-seq data without a reference genome: identification, quantification, differential analysis and impact on the protein sequence
H Lopez-Maestre, L Brinza, C Marchet, J Kielbassa, S Bastien, ...
Nucleic Acids Research 44 (19), e148-e148, 2016
492016
A resource-frugal probabilistic dictionary and applications in bioinformatics
C Marchet, L Lecompte, A Limasset, L Bittner, P Peterlongo
Discrete Applied Mathematics 274, 92-102, 2020
21*2020
Complementarity of assembly-first and mapping-first approaches for alternative splicing annotation and differential analysis from RNAseq data
C Benoit-Pilven, C Marchet, E Chautard, L Lima, MP Lambert, ...
Scientific reports 8 (1), 1-13, 2018
17*2018
De novo clustering of long reads by gene from transcriptomics data
C Marchet, L Lecompte, CD Silva, C Cruaud, JM Aury, J Nicolas, ...
Nucleic acids research 47 (1), e2-e2, 2019
15*2019
Playing hide and seek with repeats in local and global de novo transcriptome assembly of short RNA-seq reads
L Lima, B Sinaimeri, G Sacomoto, H Lopez-Maestre, C Marchet, V Miele, ...
Algorithms for Molecular Biology 12 (1), 2, 2017
14*2017
Comparative assessment of long-read error correction software applied to Nanopore RNA-sequencing data
L Lima, C Marchet, S Caboche, C Da Silva, B Istace, JM Aury, H Touzet, ...
Briefings in Bioinformatics, 2019
9*2019
A de novo approach to disentangle partner identity and function in holobiont systems
A Meng, C Marchet, E Corre, P Peterlongo, A Alberti, C Da Silva, ...
Microbiome 6 (1), 105, 2018
82018
ELECTOR: Evaluator for long reads correction methods
C Marchet, P Morisse, L Lecompte, A Lefebvre, T Lecroq, P Peterlongo, ...
NAR Genomics and Bioinformatics 2 (1), lqz015, 2020
62020
Data structures based on k-mers for querying large collections of sequencing datasets
C Marchet, C Boucher, SJ Puglisi, P Medvedev, M Salson, R Chikhi
bioRxiv, 866756, 2019
62019
Colib’read on galaxy: a tools suite dedicated to biological information extraction from raw NGS reads
Y Le Bras, O Collin, C Monjeaud, V Lacroix, É Rivals, C Lemaitre, V Miele, ...
GigaScience 5 (1), s13742-015-0105-2, 2016
62016
CONSENT: Scalable long read self-correction and assembly polishing with multiple sequence alignment
P Morisse, C Marchet, A Limasset, T Lecroq, A Lefebvre
BioRxiv, 546630, 2020
52020
Indexing De Bruijn graphs with minimizers
C Marchet, M Kerbiriou, A Limasset
Recomb seq, 2019
42019
REINDEER: efficient indexing of k-mer presence and abundance in sequencing datasets
C Marchet, Z Iqbal, D Gautheret, M Salson, R Chikhi
bioRxiv, 2020
22020
From reads to transcripts: de novo methods for the analysis of transcriptome second and third generation sequencing.
C Marchet
Université de Rennes 1, 2018
12018
Read correction for non-uniform coverages
C Marchet, Y Dufresne, A Limasset
bioRxiv, 673624, 2019
2019
CARNAC-LR: Clustering coefficient-based Acquisition of RNA Communities in Long Reads
C Marchet, L Lecompte, C Da Silva, C Cruaud, JM Aury, J Nicolas, ...
JOBIM, 2018
2018
ELECTOR: EvaLuation of Error Correction Tools for lOng Reads
L Lecompte, C Marchet, P Morisse, A Limasset, P Peterlongo, A Lefebvre, ...
JOBIM, 2018
2018
Simulation of RNA sequencIng with Oxford Nanopore Technologies
C Marchet, L Lima
JOBIM, 2018
2018
The’kissDE’package
C Benoit-Pilven, C Marchet, J Kielbassa, A Cologne, A Siberchicot, ...
2018
CARNAC-LR: De novo Clustering of Gene Expressed Variants in Transcriptomic Long Reads Data Sets
C Marchet, L Lecompte, C Da Silva, C Cruaud, JM Aury, J Nicolas, ...
RECOMB-seq, 2018
2018
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Articles 1–20