Modeling the combined effect of RNA-binding proteins and microRNAs in post-transcriptional regulation S HafezQorani, A Lafzi, RG de Bruin, AJ van Zonneveld, EP van der Veer, ... Nucleic acids research 44 (9), e83-e83, 2016 | 37 | 2016 |
Systematic assessment of long-read RNA-seq methods for transcript identification and quantification FJ Pardo-Palacios, D Wang, F Reese, M Diekhans, S Carbonell-Sala, ... bioRxiv, 2021 | 32 | 2021 |
Trans-NanoSim characterizes and simulates nanopore RNA-sequencing data S Hafezqorani, C Yang, T Lo, KM Nip, RL Warren, I Birol Gigascience 9 (6), giaa061, 2020 | 18 | 2020 |
RBPSponge: genome-wide identification of lncRNAs that sponge RBPs S HafezQorani, A Houdjedj, M Arici, A Said, H Kazan Bioinformatics 35 (22), 4760-4763, 2019 | 13 | 2019 |
Predicting clinical outcomes in neuroblastoma with genomic data integration I Baali, DAE Acar, TW Aderinwale, S HafezQorani, H Kazan Biology Direct 13, 1-14, 2018 | 13 | 2018 |
Reference-free assembly of long-read transcriptome sequencing data with RNA-Bloom2 KM Nip, S Hafezqorani, KK Gagalova, R Chiu, C Yang, RL Warren, I Birol Nature Communications 14 (1), 2940, 2023 | 9 | 2023 |
Characterization and simulation of metagenomic nanopore sequencing data with Meta-NanoSim C Yang, T Lo, KM Nip, S Hafezqorani, RL Warren, I Birol GigaScience 12, giad013, 2023 | 3 | 2023 |
RNA-Scoop: interactive visualization of transcripts in single-cell transcriptomes M Stephenson, KM Nip, S HafezQorani, KK Gagalova, C Yang, ... NAR Genomics and Bioinformatics 3 (4), lqab105, 2021 | 1 | 2021 |
ntEmbd: Deep learning embedding for nucleotide sequences S Hafezqorani, KM Nip, I Birol bioRxiv, 2024.04. 30.591806, 2024 | | 2024 |
SCITUNA: a network alignment approach for integrating multiple single-cell RNA-Seq datasets O Dogan, BO Erten, C Erten, A Houdjedj, H Kazan, M Krichen, Y Marouf 15th International Symposium on Health Informatics and Bioinformatics HIBIT …, 2022 | | 2022 |
Investigating the role of alternative polyadenylation in lung squamous cell carcinoma S HafezQorani, H Kazan | | 2016 |