| Validation of microsatellite instability detection using a comprehensive plasma-based genotyping panel J Willis, MI Lefterova, A Artyomenko, PM Kasi, Y Nakamura, K Mody, ... Clinical Cancer Research 25 (23), 7035-7045, 2019 | 35 | 2019 |
| Reconstruction of viral population structure from next-generation sequencing data using multicommodity flows P Skums, N Mancuso, A Artyomenko, B Tork, I Mandoiu, Y Khudyakov, ... BMC bioinformatics 14 (S9), S2, 2013 | 34 | 2013 |
| Computational framework for next-generation sequencing of heterogeneous viral populations using combinatorial pooling P Skums, A Artyomenko, O Glebova, S Ramachandran, I Mandoiu, ... Bioinformatics 31 (5), 682-690, 2015 | 18 | 2015 |
| Inference of genetic relatedness between viral quasispecies from sequencing data O Glebova, S Knyazev, A Melnyk, A Artyomenko, Y Khudyakov, ... BMC genomics 18 (10), 81-88, 2017 | 14 | 2017 |
| Long single-molecule reads can resolve the complexity of the influenza virus composed of rare, closely related mutant variants A Artyomenko, NC Wu, S Mangul, E Eskin, R Sun, A Zelikovsky Journal of Computational Biology 24 (6), 558-570, 2017 | 12 | 2017 |
| kgem: An em-based algorithm for local reconstruction of viral quasispecies A Artyomenko, N Mancuso, A Zelikovsky, P Skums, I Măndoiu 2013 IEEE 3rd International Conference on Computational Advances in Bio and …, 2013 | 6 | 2013 |
| CliqueSNV: Scalable Reconstruction of Intra-Host Viral Populations from NGS Reads S Knyazev, V Tsyvina, A Melnyk, A Artyomenko, T Malygina, YB Porozov, ... bioRxiv, 264242, 2018 | 5 | 2018 |
| Long single-molecule reads can resolve the complexity of the Influenza virus composed of rare, closely related mutant variants A Artyomenko, NC Wu, S Mangul, E Eskin, R Sun, A Zelikovsky International Conference on Research in Computational Molecular Biology, 164-175, 2016 | 5 | 2016 |
| 1190P Microsatellite instability detection by targeted sequencing of cell-free DNA A Artyomenko, M Sikora, M Lefterova, VM Raymond, D Gavino, ... Annals of Oncology 29 (suppl_8), mdy288. 063, 2018 | 4 | 2018 |
| kGEM: An Expectation Maximization Error Correction Algorithm for Next Generation Sequencing of Amplicon-based Data A Artyomenko, N Mancuso, P Skums, I Mandoiu, A Zelikovsky Proc. International Symposium Bioinformatics Research and Applications, 2013 | 4 | 2013 |
| Assessment of hcv infection stage as recent or chronic using multi-parameter analysis and machine learning PI Baykal, A Artyomenko, S Ramachandran, Y Khudyakov, A Zelikovsky, ... 2017 IEEE 7th International Conference on Computational Advances in Bio and …, 2017 | 3 | 2017 |
| Error correction of ngs reads from viral populations P Skums, A Artyomenko, O Glebova, DS Campo, Z Dimitrova, ... METHODS FOR NEXT GENERATION SEQUENCING DATA ANALYSIS, 331, 2016 | 3 | 2016 |
| Analytical validation of MSI High detection with GuardantOMNI J Zhao, A Artyomenko, C Artieri, J Latham, SR Fairclough, C Barbacioru, ... Cancer Research 79 (13 Supplement), 1675-1675, 2019 | 2 | 2019 |
| 2SNV: Quasispecies reconstruction from PacBio reads A Artyomenko, NC Wu, S Mangul, E Eskin, R Sun, A Zelikovsky 2015 IEEE 5th International Conference on Computational Advances in Bio and …, 2015 | 2 | 2015 |
| Detection of genetic relatedness between viral samples using EM-based clustering of next-generation sequencing data P Skums, A Artyomenko, O Glebova, A Zelikovsky, DS Campo, ... 2014 IEEE 4th International Conference on Computational Advances in Bio and …, 2014 | 2 | 2014 |
| Deterministic regression algorithm for transcriptome frequency estimation A Caciula, O Glebova, A Artyomenko, S Mangul, J Lindsay, II Măndoiu, ... 2014 IEEE 4th International Conference on Computational Advances in Bio and …, 2014 | 2 | 2014 |
| Reconstruction of infectious bronchitis virus quasispecies from ngs data B Tork, E Nenastyeva, A Artyomenko, N Mancuso, MI Khan, R O’Neill, ... Computational Methods for Next Generation Sequencing Data Analysis, 383-400, 2016 | 1 | 2016 |
| Simulated Regression Algorithm for Transcriptome Quantification A Caciula, O Glebova, A Artyomenko, S Mangul, J Lindsay, II Mandoiu, ... Bioinformatics Research and Applications: 10th International Symposium …, 2014 | 1 | 2014 |
| Reconstruction of influenza a virus variants from PacBio reads A Artyomenko, S Mangul, NC Wu, E Eskin, R Sun, A Zelikovsky 2014 IEEE 4th International Conference on Computational Advances in Bio and …, 2014 | 1 | 2014 |
| Accurate assembly of minority viral haplotypes from next-generation sequencing through efficient noise reduction S Knyazev, V Tsyvina, A Shankar, A Melnyk, A Artyomenko, T Malygina, ... bioRxiv, 264242, 2020 | | 2020 |
Alexander ZelikovskyGeorgia State UniversityVerified email at cs.gsu.edu
