Jamie McCusker

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Deborah L. McGuinnessTetherless World Chair, Prof. Computer, Cognitive,Web Sciences, Industrial &Systems Engineering,RPIVerified email at cs.rpi.edu
Michael KrauthammerUniversity of ZurichVerified email at uzh.ch
Sabbir M. RashidRensselaer Polytechnic InstituteVerified email at rpi.edu
Timothy LeboRensselaer Polytechnic InstituteVerified email at rpi.edu
Michel DumontierDistinguished Professor of Data Science, Maastricht UniversityVerified email at maastrichtuniversity.nl
Kristin P. BennettProfessor of Mathematical Sciences, Renssealer Polytechnic InstituteVerified email at rpi.edu
Rui YanAmazonVerified email at amazon.com
Oshani SeneviratneRensselaer Polytechnic InstituteVerified email at rpi.edu
Sam CoppensAmazonVerified email at amazon.com
Stephan AriyanProfessor of Surgery, Yale UniversityVerified email at yale.edu
Ruth HalabanYale UniversityVerified email at yale.edu
Shruthi ChariPhD in Computer Science, Rensselaer Polytechnic InstituteVerified email at rpi.edu
John S. EricksonDirector of Research Operations, The Rensselaer IDEA; Director of Web Science Operations, TetherlessVerified email at rpi.edu
Amar K. DasVice President of Real World Evidence, Guardant HealthVerified email at guardanthealth.com
Satya S. SahooProfessor of Biomedical Informatics and Computer Science, Case Western Reserve UniversityVerified email at case.edu
Khalid BelhajjamePSL, Université Paris-Dauphine, LAMSADEVerified email at dauphine.fr
Paul GrothProfessor, INDE Lab, University of AmsterdamVerified email at uva.nl
LC BrinsonDuke UniversityVerified email at duke.edu
Henrique SantosRensselaer Polytechnic InstituteVerified email at rpi.edu
Nkechinyere AguRensselaer Polytechnic InstituteVerified email at rpi.edu

Jamie McCusker

Rensselaer Polytechnic Institute

Verified email at rpi.edu

Knowledge Graphs Semantic Web Computational Biology Provenance


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Exome sequencing identifies recurrent somatic RAC1 mutations in melanoma M Krauthammer, Y Kong, BH Ha, P Evans, A Bacchiocchi, JP McCusker, ... Nature genetics 44 (9), 1006-1014, 2012	1354	2012
Prov-dm: The prov data model L Moreau, P Missier, K Belhajjame, R B’Far, J Cheney, S Coppens, ... w3c, 2013	581*	2013
Exome sequencing identifies recurrent mutations in NF1 and RASopathy genes in sun-exposed melanomas M Krauthammer, Y Kong, A Bacchiocchi, P Evans, N Pornputtapong, ... Nature genetics 47 (9), 996-1002, 2015	456	2015
PLX4032, a selective BRAF^V600E kinase inhibitor, activates the ERK pathway and enhances cell migration and proliferation of BRAF^WT melanoma cells R Halaban, W Zhang, A Bacchiocchi, E Cheng, F Parisi, S Ariyan, ... Pigment cell & melanoma research 23 (2), 190-200, 2010	401	2010
When owl: sameas isn’t the same: An analysis of identity in linked data H Halpin, PJ Hayes, JP McCusker, DL McGuinness, HS Thompson The Semantic Web–ISWC 2010: 9th International Semantic Web Conference, ISWC …, 2010	392	2010
The Semanticscience Integrated Ontology (SIO) for biomedical research and knowledge discovery M Dumontier, CJO Baker, J Baran, A Callahan, L Chepelev, ... Journal of biomedical semantics 5, 1-11, 2014	262	2014
Yale Image Finder (YIF): a new search engine for retrieving biomedical images S Xu, J McCusker, M Krauthammer Bioinformatics 24 (17), 1968-1970, 2008	141	2008
The Translational Medicine Ontology and Knowledge Base: driving personalized medicine by bridging the gap between bench and bedside JS Luciano, B Andersson, C Batchelor, O Bodenreider, T Clark, ... Journal of biomedical semantics 2, 1-21, 2011	116	2011
NanoMine schema: An extensible data representation for polymer nanocomposites H Zhao, Y Wang, A Lin, B Hu, R Yan, J McCusker, W Chen, ... APL Materials 6 (11), 2018	56	2018
The semantic data dictionary–an approach for describing and annotating data SM Rashid, JP McCusker, P Pinheiro, MP Bax, HO Santos, JA Stingone, ... Data intelligence 2 (4), 443-486, 2020	53	2020
Semantic web data warehousing for caGrid JP McCusker, JA Phillips, AG Beltrán, A Finkelstein, M Krauthammer BMC bioinformatics 10, 1-10, 2009	48	2009
Polymer nanocomposite data: curation, frameworks, access, and potential for discovery and design LC Brinson, M Deagen, W Chen, J McCusker, DL McGuinness, ... ACS Macro Letters 9 (8), 1086-1094, 2020	39	2020
Linked provenance data: A semantic Web-based approach to interoperable workflow traces L Ding, J Michaelis, J McCusker, DL McGuinness Future Generation Computer Systems 27 (6), 797-805, 2011	38	2011
Finding melanoma drugs through a probabilistic knowledge graph JP McCusker, M Dumontier, R Yan, S He, JS Dordick, DL McGuinness PeerJ Computer Science 3, e106, 2017	34	2017
Nanomine: A knowledge graph for nanocomposite materials science JP McCusker, N Keshan, S Rashid, M Deagen, C Brinson, ... International Semantic Web Conference, 144-159, 2020	31	2020
A semantic web framework to integrate cancer omics data with biological knowledge ME Holford, JP McCusker, KH Cheung, M Krauthammer BMC bioinformatics 13, 1-12, 2012	30	2012
Translating standards into practice: one semantic web API for gene expression HF Deus, J Zhao, JP McCusker, R Fox, E Prud'hommeaux, J Malone, ... Proceedings of the 4th International Workshop on Semantic Web Applications …, 2011	26	2011
What is a knowledge graph JP McCusker, J Erickson, K Chastain, S Rashid, R Weerawarana, ... Semantic Web Journal, 2-14, 2018	25	2018
Parallel Identities for Managing Open Government Data JP McCusker, T Lebo, C Chang, PP da Silva, DL McGuinness IEEE Intelligent Systems, 2012	24	2012
Towards identity in linked data J McCusker, D McGuinness Proceedings of OWL: Experience and Directions, San Francisco, USA (June 21 …, 2010	24	2010

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