| Structural role of countertransport revealed in Ca2+ pump crystal structure in the absence of Ca2+ K Obara, N Miyashita, C Xu, I Toyoshima, Y Sugita, G Inesi, C Toyoshima Proceedings of the National Academy of Sciences 102 (41), 14489-14496, 2005 | 292 | 2005 |
| Molecular dynamics simulations of biological membranes and membrane proteins using enhanced conformational sampling algorithms T Mori, N Miyashita, W Im, M Feig, Y Sugita Biochimica et Biophysica Acta (BBA)-Biomembranes 1858 (7), 1635-1651, 2016 | 141 | 2016 |
| Structures of β-Amyloid Peptide 1− 40, 1− 42, and 1− 55 the 672− 726 Fragment of APP in a Membrane Environment with Implications for Interactions with γ-Secretase N Miyashita, JE Straub, D Thirumalai Journal of the American Chemical Society 131 (49), 17843-17852, 2009 | 116 | 2009 |
| Transmembrane structures of amyloid precursor protein dimer predicted by replica-exchange molecular dynamics simulations N Miyashita, JE Straub, D Thirumalai, Y Sugita Journal of the American Chemical Society 131 (10), 3438-3439, 2009 | 103 | 2009 |
| Effect of bisecting GlcNAc and core fucosylation on conformational properties of biantennary complex-type N-glycans in solution W Nishima, N Miyashita, Y Yamaguchi, Y Sugita, S Re The Journal of Physical Chemistry B 116 (29), 8504-8512, 2012 | 90 | 2012 |
| Protonation of the Acidic Residues in the Transmembrane Cation-Binding Sites of the Ca2+ Pump Y Sugita, N Miyashita, M Ikeguchi, A Kidera, C Toyoshima Journal of the American Chemical Society 127 (17), 6150-6151, 2005 | 72 | 2005 |
| Functionality mapping on internal surfaces of multidrug transporter AcrB based on molecular theory of solvation: implications for drug efflux pathway T Imai, N Miyashita, Y Sugita, A Kovalenko, F Hirata, A Kidera The Journal of Physical Chemistry B 115 (25), 8288-8295, 2011 | 57 | 2011 |
| Conformational flexibility of N-glycans in solution studied by REMD simulations S Re, W Nishima, N Miyashita, Y Sugita Biophysical reviews 4, 179-187, 2012 | 46 | 2012 |
| Structural diversity and changes in conformational equilibria of biantennary complex-type N-glycans in water revealed by replica-exchange molecular dynamics simulation S Re, N Miyashita, Y Yamaguchi, Y Sugita Biophysical journal 101 (10), L44-L46, 2011 | 44 | 2011 |
| Structural changes in the cytoplasmic domain of phospholamban by phosphorylation at Ser16: a molecular dynamics study Y Sugita, N Miyashita, T Yoda, M Ikeguchi, C Toyoshima Biochemistry 45 (39), 11752-11761, 2006 | 42 | 2006 |
| Multidimensional umbrella sampling and replica‐exchange molecular dynamics simulations for structure prediction of transmembrane helix dimers PC Li, N Miyashita, W Im, S Ishido, Y Sugita Journal of computational chemistry 35 (4), 300-308, 2014 | 40 | 2014 |
| Coherence recovery and photoinduced phase transitions in one-dimensional halogen-bridged binuclear platinum complexes K Yonemitsu, N Miyashita Physical Review B 68 (7), 075113, 2003 | 35 | 2003 |
| Electronic and lattice dynamics in the photoinduced ionic-to-neutral phase transition in a one-dimensional extended Peierls–Hubbard model N Miyashita, M Kuwabara, K Yonemitsu Journal of the Physical Society of Japan 72 (9), 2282-2290, 2003 | 30 | 2003 |
| Quantum diffraction and threshold law for the Temkin-Poet model of electron-hydrogen ionization N Miyashita, D Kato, S Watanabe Physical Review A 59 (6), 4385, 1999 | 28 | 1999 |
| Energetics of the presequence-binding poses in mitochondrial protein import through Tom20 Y Komuro, N Miyashita, T Mori, E Muneyuki, T Saitoh, D Kohda, Y Sugita The Journal of Physical Chemistry B 117 (10), 2864-2871, 2013 | 17 | 2013 |
| The intertransmembrane region of Kaposi's sarcoma-associated herpesvirus modulator of immune recognition 2 contributes to B7-2 downregulation M Kajikawa, PC Li, E Goto, N Miyashita, M Aoki-Kawasumi, ... Journal of virology 86 (9), 5288-5296, 2012 | 14 | 2012 |
| On-the-fly analysis of molecular dynamics simulation trajectories of proteins using the Bayesian inference method N Miyashita, Y Yonezawa The Journal of Chemical Physics 147 (12), 2017 | 5 | 2017 |
| REIN: Replica‐exchange INterface for simulating protein dynamics and function N Miyashita, S Re, Y Sugita International Journal of Quantum Chemistry 115 (5), 325-332, 2015 | 5 | 2015 |
| Recent applications of replica-exchange molecular dynamics simulations of biomolecules Y Sugita, N Miyashita, PC Li, T Yoda, Y Okamoto Current Physical Chemistry 2 (4), 401-412, 2012 | 5 | 2012 |
| Influence of short-range interference on ionization threshold law N Miyashita, S Watanabe, M Matsuzawa, JH Macek Physical Review A 61 (1), 014901, 1999 | 5 | 1999 |
John E. StraubProfessor of Chemistry, Boston UniversityVerified email at bu.edu
