|ANGES: reconstructing ANcestral GEnomeS maps|
BR Jones, A Rajaraman, E Tannier, C Chauve
Bioinformatics 28 (18), 2388-2390, 2012
|Phylogenetic approach to recover integration dates of latent HIV sequences within-host|
BR Jones, NN Kinloch, J Horacsek, B Ganase, M Harris, PR Harrigan, ...
Proceedings of the National Academy of Sciences 115 (38), E8958-E8967, 2018
|node.dating: dating ancestors in phylogenetic trees in R|
BR Jones, AFY Poon
Bioinformatics 33 (6), 932-934, 2017
|Genetic complexity in the replication-competent latent HIV reservoir increases with untreated infection duration in infected youth|
ZL Brumme, H Sudderuddin, C Ziemniak, K Luzuriaga, BR Jones, JB Joy, ...
Aids 33 (2), 211-218, 2019
|Tree hook length formulae, Feynman rules and B-series|
BR Jones, K Yeats
arXiv preprint arXiv:1412.6053, 2014
|The global origins of resistance-associated variants in the non-structural proteins 5A and 5B of the hepatitis C virus|
BR Jones, AYM Howe, PR Harrigan, JB Joy
Virus evolution 4 (1), vex041, 2018
|Tree shape‐based approaches for the comparative study of cophylogeny|
M Avino, GT Ng, YY He, MS Renaud, BR Jones, AFY Poon
Ecology and Evolution, 2018
|Genetic diversity, compartmentalization and age of HIV proviruses persisting in CD4+ T cell subsets during long-term combination antiretroviral therapy|
BR Jones, RL Miller, NN Kinloch, O Tsai, H Rigsby, H Sudderuddin, ...
Journal of virology, 2019
|treeio: an R package for phylogenetic tree input and output with richly annotated and associated data|
LG Wang, TTY Lam, S Xu, Z Dai, L Zhou, T Feng, P Guo, CW Dunn, ...
Molecular Biology and Evolution, 2019
|HIV diversity and genetic compartmentalization in blood and testes during suppressive antiretroviral therapy|
RL Miller, R Ponte, BR Jones, NN Kinloch, FH Omondi, MA Jenabian, ...
Journal of virology, JVI. 00755-19, 2019
|GENERATING TREES: COMPUTING AND GENERATING FUNCTIONS|
MATH 821-Final Projects December 2010, 91, 2010