Sahar AL Seesi
Sahar AL Seesi
Associate Professor, Computer Science, Southern Connecticut State University
Verified email at southernct.edu
Title
Cited by
Cited by
Year
Genomic and bioinformatic profiling of mutational neoepitopes reveals new rules to predict anticancer immunogenicity
F Duan, J Duitama, S Al Seesi, CM Ayres, SA Corcelli, AP Pawashe, ...
Journal of Experimental Medicine 211 (11), 2231-2248, 2014
2462014
Bootstrap-based differential gene expression analysis for RNA-Seq data with and without replicates
S Al Seesi, YT Tiagueu, A Zelikovsky, II Măndoiu
BMC genomics 15 (S8), S2, 2014
412014
Determination of dosage compensation of the mammalian X chromosome by RNA-seq is dependent on analytical approach
NK Jue, MB Murphy, SD Kasowitz, SM Qureshi, CJ Obergfell, S Elsisi, ...
BMC genomics 14 (1), 150, 2013
322013
Fast bootstrapping-based estimation of confidence intervals of expression levels and differential expression from RNA-Seq data
I Mandric, Y Temate-Tiagueu, T Shcheglova, S Al Seesi, A Zelikovsky, ...
Bioinformatics 33 (20), 3302-3304, 2017
302017
An integer programming approach to novel transcript reconstruction from paired-end RNA-Seq reads
S Mangul, A Caciula, S Al Seesi, D Brinza, AR Banday, R Kanadia
Proceedings of the ACM Conference on Bioinformatics, Computational Biology …, 2012
212012
Replication-dependent histone genes are actively transcribed in differentiating and aging retinal neurons
AR Banday, M Baumgartner, S Al Seesi, DKP Karunakaran, A Venkatesh, ...
Cell cycle 13 (16), 2526-2541, 2014
202014
Minor spliceosome inactivation causes microcephaly, owing to cell cycle defects and death of self-amplifying radial glial cells
M Baumgartner, AM Olthof, GS Aquino, KC Hyatt, C Lemoine, K Drake, ...
Development 145 (17), 2018
152018
Minor splicing sn RNA s are enriched in the developing mouse CNS and are crucial for survival of differentiating retinal neurons
M Baumgartner, C Lemoine, S Al Seesi, DKP Karunakaran, N Sturrock, ...
Developmental neurobiology 75 (9), 895-907, 2015
152015
Transcriptome assembly and quantification from Ion Torrent RNA-Seq data
S Mangul, A Caciula, S Al Seesi, D Brinza, I Mӑndoiu, A Zelikovsky
BMC genomics 15 (5), 1-11, 2014
142014
Key parameters of tumor epitope immunogenicity revealed through a consortium approach improve neoantigen prediction
DK Wells, MM van Buuren, KK Dang, VM Hubbard-Lucey, KCF Sheehan, ...
Cell 183 (3), 818-834. e13, 2020
102020
Network-based bioinformatics analysis of spatio-temporal RNA-Seq data reveals transcriptional programs underpinning normal and aberrant retinal development
DKP Karunakaran, S Al Seesi, AR Banday, M Baumgartner, A Olthof, ...
BMC genomics 17 (5), 477-492, 2016
102016
Inferring metabolic pathway activity levels from RNA-Seq data
Y Temate-Tiagueu, S Al Seesi, M Mathew, I Mandric, A Rodriguez, ...
BMC genomics 17 (5), 542, 2016
62016
Genomics-Guided Immunotherapy of Human Epithelial Ovarian Cancer
S Al Seesi, F Duan, II Mandoiu, PK Srivastava, A Kueck
Translational Cardiometabolic Genomic Medicine, 237-250, 2016
42016
Improved algorithms for parsing ESLTAGs: A grammatical model suitable for RNA pseudoknots
S Rajasekaran, S Al Seesi, RA Ammar
IEEE/ACM Transactions on Computational Biology and Bioinformatics 7 (4), 619-627, 2010
42010
Pseudoknot Identification through Learning TAGRNA
S Al Seesi, S Rajasekaran, R Ammar
IAPR International Conference on Pattern Recognition in Bioinformatics, 132-143, 2008
42008
Effects of maternal nutrition on the expression of genomic imprinted genes in ovine fetuses
J Duan, M Zhang, K Flock, SA Seesi, I Mandoiu, A Jones, E Johnson, ...
Epigenetics 13 (8), 793-807, 2018
32018
Transcriptome reconstruction and quantification from RNA sequencing Data
S Al Seesi, S Mangul, A Caciula, A Zelikovsky, I Măndoiu
Genome Analysis: Current Procedures and Applications, 39, 2014
32014
Dosage Compensation and Gene Expression of the X Chromosome in Sheep
JE Duan, K Flock, N Jue, M Zhang, A Jones, S Al Seesi, I Mandoiu, ...
G3: Genes, Genomes, Genetics 9 (1), 305-314, 2019
22019
Inference of allele specific expression levels from RNA-Seq data
S Al Seesi, II Măndoiu
Proceedings of the 8th International Symposium on Bioinformatics Research …, 2012
22012
Improved Algorithms for Parsing ESLTAGs: A Grammatical Model Suitable for RNA Pseudoknots
S Rajasekaran, S Al Seesi, R Ammar
International Symposium on Bioinformatics Research and Applications, 135-147, 2009
22009
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Articles 1–20