Brandon Brooks
Brandon Brooks
Computational Biologist
Email verificata su berkeley.edu - Home page
Titolo
Citata da
Citata da
Anno
dRep: a tool for fast and accurate genomic comparisons that enables improved genome recovery from metagenomes through de-replication
MR Olm, CT Brown, B Brooks, JF Banfield
The ISME journal 11 (12), 2864-2868, 2017
2602017
Schrödinger’s microbes: tools for distinguishing the living from the dead in microbial ecosystems
JB Emerson, RI Adams, CMB Román, B Brooks, DA Coil, K Dahlhausen, ...
Microbiome 5 (1), 1-23, 2017
1922017
Microbes in the neonatal intensive care unit resemble those found in the gut of premature infants
B Brooks, BA Firek, CS Miller, I Sharon, BC Thomas, R Baker, ...
Microbiome 2 (1), 1-16, 2014
1752014
Gut bacteria are rarely shared by co-hospitalized premature infants, regardless of necrotizing enterocolitis development
T Raveh-Sadka, BC Thomas, A Singh, B Firek, B Brooks, CJ Castelle, ...
Elife 4, e05477, 2015
1172015
Clades of huge phages from across Earth’s ecosystems
B Al-Shayeb, R Sachdeva, LX Chen, F Ward, P Munk, A Devoto, ...
Nature 578 (7795), 425-431, 2020
852020
Strain-resolved analysis of hospital rooms and infants reveals overlap between the human and room microbiome
B Brooks, MR Olm, BA Firek, R Baker, BC Thomas, MJ Morowitz, ...
Nature communications 8 (1), 1-7, 2017
772017
Identical bacterial populations colonize premature infant gut, skin, and oral microbiomes and exhibit different in situ growth rates
MR Olm, CT Brown, B Brooks, B Firek, R Baker, D Burstein, K Soenjoyo, ...
Genome research 27 (4), 601-612, 2017
542017
Metaproteomics reveals functional shifts in microbial and human proteins during a preterm infant gut colonization case
JC Young, C Pan, RM Adams, B Brooks, JF Banfield, MJ Morowitz, ...
Proteomics 15 (20), 3463-3473, 2015
422015
The developing premature infant gut microbiome is a major factor shaping the microbiome of neonatal intensive care unit rooms
B Brooks, MR Olm, BA Firek, R Baker, D Geller-McGrath, SR Reimer, ...
Microbiome 6 (1), 1-12, 2018
292018
Strain-resolved microbial community proteomics reveals simultaneous aerobic and anaerobic function during gastrointestinal tract colonization of a preterm infant
B Brooks, RS Mueller, JC Young, MJ Morowitz, RL Hettich, JF Banfield
Frontiers in microbiology 6, 654, 2015
272015
Genome-resolved metagenomics of eukaryotic populations during early colonization of premature infants and in hospital rooms
MR Olm, PT West, B Brooks, BA Firek, R Baker, MJ Morowitz, JF Banfield
Microbiome 7 (1), 1-16, 2019
232019
Disturbances of the perioperative microbiome across multiple body sites in patients undergoing pancreaticoduodenectomy
MB Rogers, V Aveson, B Firek, A Yeh, B Brooks, R Brower-Sinning, ...
Pancreas 46 (2), 260, 2017
232017
Schrödinger’s microbes: tools for distinguishing the living from the dead in microbial ecosystems. Microbiome 5: 86
JB Emerson, RI Adams, CMB Román, B Brooks, DA Coil, K Dahlhausen, ...
202017
Concentrations and sources of airborne particles in a neonatal intensive care unit
D Licina, S Bhangar, B Brooks, R Baker, B Firek, X Tang, MJ Morowitz, ...
PLoS One 11 (5), e0154991, 2016
202016
Pilot study of sources and concentrations of size-resolved airborne particles in a neonatal intensive care unit
S Bhangar, B Brooks, B Firek, D Licina, X Tang, MJ Morowitz, JF Banfield, ...
Building and Environment 106, 10-19, 2016
82016
dRep: a tool for fast and accurate genome de-replication that enables tracking of microbial genotypes and improved genome recovery from metagenomes
MR Olm, CT Brown, B Brooks, JF Banfield
BioRxiv, 108142, 2017
52017
High-resolution temporal profiling of the human gut microbiome reveals consistent and cascading alterations in response to dietary glycans
R Creswell, J Tan, JW Leff, B Brooks, MA Mahowald, R Thieroff-Ekerdt, ...
Genome medicine 12 (1), 1-16, 2020
32020
Strain-level overlap between infant and hospital fungal microbiomes revealed through de novo assembly of eukaryotic genomes from metagenomes
MR Olm, PT West, B Brooks, BA Firek, R Baker, MJ Morowitz, JF Banfield
BioRxiv, 324566, 2018
12018
Towards the refinement of von Neumann machines
C Brown, D Sanders, B Brooks
Journal of Computer Science and Software Engineering 10 (2), 278389, 0
1
A Pilot Study on the Effect of Prebiotic on Host-Microbial Co-metabolism in Peritoneal Dialysis Patients
B Gao, N Alonzo-Palma, B Brooks, A Jose, D Barupal, M Jagadeesan, ...
Kidney international reports 5 (8), 1309, 2020
2020
Il sistema al momento non può eseguire l'operazione. Riprova più tardi.
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