Juan Antonio Vizcaino
Juan Antonio Vizcaino
Proteomics Team Leader, EMBL-EBI
Verified email at ebi.ac.uk - Homepage
Title
Cited by
Cited by
Year
2016 update of the PRIDE database and its related tools
JA Vizcaíno, A Csordas, N Del-Toro, JA Dianes, J Griss, I Lavidas, ...
Nucleic acids research 44 (D1), D447-D456, 2016
31832016
The PRIDE database and related tools and resources in 2019: improving support for quantification data
Y Perez-Riverol, A Csordas, J Bai, M Bernal-Llinares, S Hewapathirana, ...
Nucleic acids research 47 (D1), D442-D450, 2019
28542019
ProteomeXchange provides globally coordinated proteomics data submission and dissemination
JA Vizcaíno, EW Deutsch, R Wang, A Csordas, F Reisinger, D Ríos, ...
Nature biotechnology 32 (3), 223-226, 2014
21902014
The PRoteomics IDEntifications (PRIDE) database and associated tools: status in 2013
JA Vizcaíno, RG Côté, A Csordas, JA Dianes, A Fabregat, JM Foster, ...
Nucleic acids research 41 (D1), D1063-D1069, 2012
17722012
The ProteomeXchange consortium in 2017: supporting the cultural change in proteomics public data deposition
EW Deutsch, A Csordas, Z Sun, A Jarnuczak, Y Perez-Riverol, T Ternent, ...
Nucleic acids research, gkw936, 2016
5542016
Shorthand notation for lipid structures derived from mass spectrometry
G Liebisch, JA Vizcaíno, H Köfeler, M Trötzmüller, WJ Griffiths, G Schmitz, ...
Journal of lipid research 54 (6), 1523-1530, 2013
5502013
A HUPO test sample study reveals common problems in mass spectrometry–based proteomics
AW Bell, EW Deutsch, CE Au, RE Kearney, R Beavis, S Sechi, T Nilsson, ...
Nature methods 6 (6), 423-430, 2009
3402009
The proteomics identifications database: 2010 update
JA Vizcaíno, R Côté, F Reisinger, H Barsnes, JM Foster, J Rameseder, ...
Nucleic acids research 38 (suppl 1), D736-D742, 2010
2522010
A guide to the Proteomics Identifications Database proteomics data repository
JA Vizcaíno, R Côté, F Reisinger, J M Foster, M Mueller, J Rameseder, ...
Proteomics 9 (18), 4276-4283, 2009
2472009
Expression Atlas: gene and protein expression across multiple studies and organisms
I Papatheodorou, NA Fonseca, M Keays, YA Tang, E Barrera, W Bazant, ...
Nucleic acids research 46 (D1), D246-D251, 2018
2352018
Making sense of big data in health research: towards an EU action plan
C Auffray, R Balling, I Barroso, L Bencze, M Benson, J Bergeron, ...
Genome medicine 8 (1), 1-13, 2016
2022016
PRIDE Converter: making proteomics data-sharing easy
H Barsnes, JA Vizcaíno, I Eidhammer, L Martens
Nature biotechnology 27 (7), 598-599, 2009
1942009
The mzIdentML data standard for mass spectrometry-based proteomics results
AR Jones, M Eisenacher, G Mayer, O Kohlbacher, J Siepen, S Hubbard, ...
Molecular & Cellular Proteomics, 2012
1902012
Making proteomics data accessible and reusable: current state of proteomics databases and repositories
Y Perez‐Riverol, E Alpi, R Wang, H Hermjakob, JA Vizcaíno
Proteomics 15 (5-6), 930-950, 2015
1472015
The ProteomeXchange consortium in 2020: enabling ‘big data’approaches in proteomics
EW Deutsch, N Bandeira, V Sharma, Y Perez-Riverol, JJ Carver, ...
Nucleic acids research 48 (D1), D1145-D1152, 2020
1362020
PRIDE Inspector: a tool to visualize and validate MS proteomics data
R Wang, A Fabregat, D Ríos, D Ovelleiro, JM Foster, RG Côté, J Griss, ...
Nature biotechnology 30 (2), 135-137, 2012
1222012
Expression Atlas update: from tissues to single cells
I Papatheodorou, P Moreno, J Manning, AMP Fuentes, N George, ...
Nucleic acids research 48 (D1), D77-D83, 2020
1182020
The PRoteomics IDEntification (PRIDE) Converter 2 framework: an improved suite of tools to facilitate data submission to the PRIDE database and the ProteomeXchange consortium
RG Côté, J Griss, JA Dianes, R Wang, JC Wright, HWP van den Toorn, ...
Molecular & Cellular Proteomics 11 (12), 1682-1689, 2012
1142012
Recognizing millions of consistently unidentified spectra across hundreds of shotgun proteomics datasets
J Griss, Y Perez-Riverol, S Lewis, DL Tabb, JA Dianes, N Del-Toro, ...
Nature methods 13 (8), 651-656, 2016
1092016
The mzTab data exchange format: communicating mass-spectrometry-based proteomics and metabolomics experimental results to a wider audience
J Griss, AR Jones, T Sachsenberg, M Walzer, L Gatto, J Hartler, ...
Molecular & Cellular Proteomics 13 (10), 2765-2775, 2014
1022014
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