Marco Antoniotti

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Bud MishraProfessor of Computer Science and MathematicsVerified email at nyu.edu
Alex GraudenziDept. of Informatics, Systems and Communication, Univ. of Milan-BicoccaVerified email at unimib.it
Giancarlo MauriProfessor of Computer Science - University of Milano-BicoccaVerified email at disco.unimib.it
Giulio CaravagnaCancer Data Science Laboratory, University of TriesteVerified email at units.it
Daniele RamazzottiDepartment of Medicine and Surgery, University of Milano-Bicocca, Milano, ItalyVerified email at unimib.it
Alberto PolicritiUniversity of UdineVerified email at uniud.it
Davide MasperoSingle Cell Genomics Team - Centre Nacional d’Anàlisi Genòmica (CNAG-CRG), Barcelona, SpainVerified email at cnag.crg.eu
Luca De SanoUniversità degli Studi di Milano BicoccaVerified email at campus.unimib.it
Naren RamakrishnanThomas L. Phillips Professor of Engineering, Virginia TechVerified email at cs.vt.edu
Rocco PiazzaUniversity of Milano-BicoccaVerified email at unimib.it
Italo ZoppisDipartimento di Informatica, Sistemistica e Comunicazione, Università degli Studi di Milano-BicoccaVerified email at unimib.it
Loes Olde LoohuisAssistant professor at UCLAVerified email at mednet.ucla.edu
Carla PiazzaProfessor of Computer Science, University of UdineVerified email at uniud.it
Chiara DamianiDepartment of Biotechnology and BiosciencesVerified email at unimib.it
De Matteis GiovanniDepartment of Mathematics and Information Sciences, Northumbria University, NewcastleVerified email at unipv.it
Daniele MericoDeep Genomics Inc.Verified email at deepgenomics.com
Claudia CavaIBFM-CNRVerified email at ibfm.cnr.it
Isabella CastiglioniResearcher, IBFM CNRVerified email at ibfm.cnr.it
Flavio De PaoliUniversità di Milano-BicoccaVerified email at disco.unimib.it
Ilya KorsunskyHarvard Medical SchoolVerified email at bwh.harvard.edu

Marco Antoniotti

Professor of Computer Science, Università degli Studi di Milano-Bicocca

Verified email at unimib.it - Homepage

Computational Biology Bioinformatics Computer Science Machine Learning


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Model building and model checking for biochemical processes M Antoniotti, A Policriti, N Ugel, B Mishra Cell biochemistry and biophysics 38 (3), 271-286, 2003	143	2003
SBML Level 3: an extensible format for the exchange and reuse of biological models SM Keating, D Waltemath, M König, F Zhang, A Dräger, C Chaouiya, ... Molecular Systems Biology 16 (8), e9110, 2020	103	2020
A pan-cancer analysis reveals high-frequency genetic alterations in mediators of signaling by the TGF-β superfamily A Korkut, S Zaidi, RS Kanchi, S Rao, NR Gough, A Schultz, X Li, ... Cell systems 7 (4), 422-437. e7, 2018	97	2018
Discrete event models+ temporal logic= supervisory controller: Automatic synthesis of locomotion controllers M Antoniotti, B Mishra Proceedings of 1995 IEEE International Conference on Robotics and Automation …, 1995	96	1995
Algorithmic algebraic model checking I: Challenges from systems biology C Piazza, M Antoniotti, V Mysore, A Policriti, F Winkler, B Mishra International Conference on Computer Aided Verification, 5-19, 2005	94	2005
From bytes to bedside: data integration and computational biology for translational cancer research JP Mathew, BS Taylor, GD Bader, S Pyarajan, M Antoniotti, ... PLoS computational biology 3 (2), e12, 2007	82	2007
CAPRI: efficient inference of cancer progression models from cross-sectional data D Ramazzotti, G Caravagna, L Olde Loohuis, A Graudenzi, I Korsunsky, ... Bioinformatics 31 (18), 3016-3026, 2015	81	2015
Algorithmic methods to infer the evolutionary trajectories in cancer progression G Caravagna, A Graudenzi, D Ramazzotti, R Sanz-Pamplona, L De Sano, ... PNAS 113 (28), E4025-E4034, 2016	78	2016
Inferring Tree Causal Models of Cancer Progression with Probability Raising L Olde Loohuis, G Caravagna, A Graudenzi, D Ramazzotti, G Mauri, ... PLoS ONE, 2014	61	2014
Foundations of a query and simulation system for the modeling of biochemical and biological processes M Antoniotti, F Park, A Policriti, N Ugel, B Mishra Biocomputing 2003, 116-127, 2002	59	2002
A review of spatial computational models for multi-cellular systems, with regard to intestinal crypts and colorectal cancer development G De Matteis, A Graudenzi, M Antoniotti Journal of mathematical biology 66 (7), 1409-1462, 2013	58	2013
Taming the complexity of biochemical models through bisimulation and collapsing: theory and practice M Antoniotti, C Piazza, A Policriti, M Simeoni, B Mishra Theoretical Computer Science 325 (1), 45-67, 2004	52	2004
A comparison of machine learning techniques for survival prediction in breast cancer L Vanneschi, A Farinaccio, G Mauri, M Antoniotti, P Provero, M Giacobini BioData mining 4 (1), 1-13, 2011	50	2011
Synthesis and verification of discrete controllers for robotics and manufacturing devices with temporal logic and the Control-D system M Antoniotti New York University, 1995	49	1995
SHIFT and SMART-AHS: A Language for Hybrid System Engineering Modeling and Simulation. M Antoniotti, A Göllü DSL 97, 14-14, 1997	48	1997
Method, system and software arrangement for reconstructing formal descriptive models of processes from functional/modal data using suitable ontology B Mishra, M Antoniotti, N Ramakrishnan US Patent 7,801,841, 2010	40	2010
Microsimulation analysis of multiple merge junctions under autonomous AHS operation M Antoniotti, A Desphande, A Girault Proceedings of Conference on Intelligent Transportation Systems, 147-152, 1997	39	1997
TRONCO: an R package for the inference of cancer progression models from heterogeneous genomic data L De Sano, G Caravagna, D Ramazzotti, A Graudenzi, G Mauri, B Mishra, ... biorxiv.org, 2015	36	2015
XS-systems: extended s-systems and algebraic differential automata for modeling cellular behavior M Antoniotti, A Policriti, N Ugel, B Mishra International Conference on High-Performance Computing, 431-442, 2002	36	2002
Modeling cellular behavior with hybrid automata: Bisimulation and collapsing M Antoniotti, B Mishra, C Piazza, A Policriti, M Simeoni International Conference on Computational Methods in Systems Biology, 57-74, 2003	35	2003

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