José Juan Almagro Armenteros

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	All	Since 2016
Citations	1280	1279
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Ole WintherBiology, Univ of Copenhagen, Genomic Medicine, Rigshospitalet and Technical University of DenmarkVerified email at bio.ku.dk
Casper Kaae SønderbyResearch Scientist, Google BrainVerified email at google.com
Henrik NielsenAssociate Professor, Department of Health Technology, Technical University of DenmarkVerified email at bioinformatics.dtu.dk
Gunnar von HeijneStockholm UniversityVerified email at dbb.su.se
Thomas Nordahl PetersenDTU Food, National Food Institute, DenmarkVerified email at food.dtu.dk
Søren Kaae SønderbyVerified email at bio.ku.dk
Søren BrunakProfessor of Disease Systems Biology, University of CopenhagenVerified email at cpr.ku.dk
Konstantinos Tsirigos, PhD Bioinforma...European Bioinformatics instituteVerified email at ebi.ac.uk
Alexander Rosenberg JohansenStanford UniversityVerified email at stanford.edu
Arne ElofssonScience for Life Laboratory and department of Biochemistry and Biophysics, Stockholm UniversityVerified email at bioinfo.se
Marco SalvatoreDept. of Biology - Bioinformatics and RNA Biology - University of CopenhagenVerified email at bio.ku.dk
Olof EmanuelssonAssociate professor, Royal Institute of Technology (KTH), StockholmVerified email at kth.se
Vanessa JurtzNovo Nordisk A/SVerified email at novonordisk.com
Morten NielsenDepartment of Health Technology, The Technical University ofVerified email at cbs.dtu.dk
Simon RasmussenAssociate Professor, University of CopenhagenVerified email at cpr.ku.dk

José Juan Almagro Armenteros

Postdoc, University of Copenhagen

Verified email at cpr.ku.dk - Homepage

bioinformatics deep learning protein subcellular localization


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SignalP 5.0 improves signal peptide predictions using deep neural networks JJA Armenteros, KD Tsirigos, CK Sønderby, TN Petersen, O Winther, ... Nature biotechnology 37 (4), 420-423, 2019	785	2019
DeepLoc: prediction of protein subcellular localization using deep learning JJ Almagro Armenteros, CK Sønderby, SK Sønderby, H Nielsen, ... Bioinformatics 33 (21), 3387-3395, 2017	321	2017
Detecting sequence signals in targeting peptides using deep learning JJA Armenteros, M Salvatore, O Emanuelsson, O Winther, G Von Heijne, ... Life science alliance 2 (5), 2019	83	2019
An introduction to deep learning on biological sequence data: examples and solutions VI Jurtz, AR Johansen, M Nielsen, JJ Almagro Armenteros, H Nielsen, ... Bioinformatics 33 (22), 3685-3690, 2017	78	2017
Binning microbial genomes using deep learning JN Nissen, CK Sønderby, JJA Armenteros, CH Grønbech, HB Nielsen, ... BioRxiv, 490078, 2018	8	2018
Language modelling for biological sequences–curated datasets and baselines JJA Armenteros, AR Johansen, O Winther, H Nielsen bioRxiv, 2020	3	2020
Similar genomic patterns of clinical infective endocarditis and oral isolates of Streptococcus sanguinis and Streptococcus gordonii KH Iversen, LH Rasmussen, K Al-Nakeeb, JJA Armenteros, CS Jensen, ... Scientific reports 10 (1), 1-11, 2020	2	2020
The subcellular journey: Predicting the destination of proteins using deep learning JJA Armenteros DTU Health Technology, 2019		2019
Learning the language of life JJA Armenteros, AR Johansen, H Nielsen, O Winther ISMB/ECCB 27th Conference on Intelligent Systems for Molecular Biology and …, 2019		2019
Prediction of GPI-Anchored proteins with pointer neural networks MH Gíslason, H Nielsen, JJA Armenteros, AR Johansen bioRxiv, 838680, 2019		2019
Improved sub-nuclear prediction by Deep Learning using an augmented dataset M Salvatore, JJ Almagro Armenteros, J Lamb, E Mileti, O Winther, ...		2019
Improved metagenome binning and assembly using deep variational autoencoders JN Nissen, J Johansen, RL Allesøe, CK Sønderby, JJA Armenteros, ... Nature Biotechnology, 1-6, 0
Similar genomic patterns of clinical infective endocarditis and oral isolates of Streptococcus sanguinis and Streptococcus gordonii JJA Armenteros, CS Jensen, R Dargis
DeepLoc: prediction of protein subcellular localization using deep learning-DTU Orbit (09/11/2019) JJ Almagro Armenteros
DeepLoc: prediction of protein subcellular localization using deep learning-DTU Orbit (23/01/2019) JJ Almagro Armenteros, CK Sønderby, SK Sønderby, H Nielsen, ...
An introduction to Deep learning on biological sequence data-Examples and solutions-DTU Orbit (18/03/2018) VI Jurtz, AR Johansen, M Nielsen, JJ Almagro Armenteros, H Nielsen, ...
DeepLoc: prediction of protein subcellular localization using deep learning-DTU Orbit (11/11/2018) JJ Almagro Armenteros, CK Sønderby, SK Sønderby, H Nielsen, ...

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