Marie-Dominique Devignes
Marie-Dominique Devignes
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HexServer: an FFT-based protein docking server powered by graphics processors
G Macindoe, L Mavridis, V Venkatraman, MD Devignes, DW Ritchie
Nucleic acids research 38 (suppl_2), W445-W449, 2010
Integrative annotation of 21,037 human genes validated by full-length cDNA clones
T Imanishi, T Itoh, Y Suzuki, C O'donovan, S Fukuchi, KO Koyanagi, ...
PLoS Biol 2 (6), e162, 2004
IntelliGO: a new vector-based semantic similarity measure including annotation origin
S Benabderrahmane, M Smail-Tabbone, O Poch, A Napoli, MD Devignes
BMC bioinformatics 11 (1), 588, 2010
Prediction of homoprotein and heteroprotein complexes by protein docking and template‐based modeling: A CASP‐CAPRI experiment
MF Lensink, S Velankar, A Kryshtafovych, SY Huang, ...
Proteins: Structure, Function, and Bioinformatics 84, 323-348, 2016
Protein docking using case‐based reasoning
AW Ghoorah, MD Devignes, M Smaïl‐Tabbone, DW Ritchie
Proteins: Structure, Function, and Bioinformatics 81 (12), 2150-2158, 2013
The Genexpress IMAGE knowledge base of the human brain transcriptome: a prototype integrated resource for functional and computational genomics
G Piétu, R Mariage-Samson, NA Fayein, C Matingou, E Eveno, ...
Genome research 9 (2), 195-209, 1999
IMAGE: molecular integration of the analysis of the human genome and its expression
C Auffray, G Behar, F Bois, C Bouchier, CS Da, MD Devignes, S Duprat, ...
Comptes rendus de l'Academie des sciences. Serie III, Sciences de la vie 318 …, 1995
Many-Valued Concept Lattices for Conceptual Clustering and Information Retrieval.
N Messai, MD Devignes, A Napoli, M Smail-Tabbone
ECAI 178, 127-131, 2008
The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens
N Zhou, Y Jiang, TR Bergquist, AJ Lee, BZ Kacsoh, AW Crocker, ...
Genome biology 20 (1), 1-23, 2019
Report of the Fifth International Workshop on Human Chromosome 11 Mapping 1996.
TB Shows, M Alders, S Bennett, D Burbee, P Cartwright, ...
Cytogenetics and cell genetics 74 (1-2), 1, 1996
Querying a bioinformatic data sources registry with concept lattices
N Messai, MD Devignes, A Napoli, M Smaïl-Tabbone
International Conference on Conceptual Structures, 323-336, 2005
Activation of peroxisome proliferator-activated receptor gamma by human cytomegalovirus for de novo replication impairs migration and invasiveness of cytotrophoblasts from …
B Rauwel, B Mariamé, H Martin, R Nielsen, S Allart, B Pipy, S Mandrup, ...
Journal of virology 84 (6), 2946-2954, 2010
Application of artificial intelligence to gastroenterology and hepatology
C Le Berre, WJ Sandborn, S Aridhi, MD Devignes, L Fournier, ...
Gastroenterology 158 (1), 76-94. e2, 2020
Ontology-guided data preparation for discovering genotype-phenotype relationships
A Coulet, M Smaïl-Tabbone, P Benlian, A Napoli, MD Devignes
BMC bioinformatics 9 (S4), S3, 2008
Integrative relational machine-learning for understanding drug side-effect profiles
E Bresso, R Grisoni, G Marchetti, AS Karaboga, M Souchet, MD Devignes, ...
BMC bioinformatics 14 (1), 207, 2013
Spatial clustering of protein binding sites for template based protein docking
AW Ghoorah, MD Devignes, M Smaïl-Tabbone, DW Ritchie
Bioinformatics 27 (20), 2820-2827, 2011
Suggested ontology for pharmacogenomics (SO-Pharm): modular construction and preliminary testing
A Coulet, M Smaïl-Tabbone, A Napoli, MD Devignes
OTM Confederated International Conferences" On the Move to Meaningful …, 2006
The human semaphorin 6B gene is down regulated by PPARs
P Collet, L Domenjoud, MD Devignes, H Murad, H Schohn, M Dauça
Genomics 83 (6), 1141-1150, 2004
Codon context effect in virus translational readthrough A study in vitro of the determinants of TMV and Mo‐MuLV amber suppression
RPC Valle, G Drugeon, MD Devignes-Morch, AB Legocki, AL Haenni
FEBS letters 306 (2-3), 133-139, 1992
New insights into the classification and integration specificity of Streptococcus integrative conjugative elements through extensive genome exploration
C Ambroset, C Coluzzi, G Guédon, MD Devignes, V Loux, T Lacroix, ...
Frontiers in microbiology 6, 1483, 2016
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Articles 1–20