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Matt Settles
Matt Settles
Director of Bioinformatics, Medio Labs, Alameda, CA
Verified email at medio.ai
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Cited by
Cited by
Year
Epigenetic transgenerational actions of vinclozolin on promoter regions of the sperm epigenome
C Guerrero-Bosagna, M Settles, B Lucker, MK Skinner
PLoS One 5 (9), e13100, 2010
4762010
Microbiota of the seminal fluid from healthy and infertile men
D Hou, X Zhou, X Zhong, ML Settles, J Herring, L Wang, Z Abdo, ...
Fertility and sterility 100 (5), 1261-1269. e3, 2013
2672013
Epigenetic transgenerational inheritance of vinclozolin induced mouse adult onset disease and associated sperm epigenome biomarkers
C Guerrero-Bosagna, TR Covert, MM Haque, M Settles, EE Nilsson, ...
Reproductive toxicology 34 (4), 694-707, 2012
2632012
Vaginal microbiota of adolescent girls prior to the onset of menarche resemble those of reproductive-age women
RJ Hickey, X Zhou, ML Settles, J Erb, K Malone, MA Hansmann, ML Shew, ...
MBio 6 (2), 10.1128/mbio. 00097-15, 2015
1742015
Breeding swarms: a GA/PSO hybrid
M Settles, T Soule
Proceedings of the 7th annual conference on genetic and evolutionary …, 2005
1742005
Human milk microbial community structure is relatively stable and related to variations in macronutrient and micronutrient intakes in healthy lactating women
JE Williams, JM Carrothers, KA Lackey, NF Beatty, MA York, SL Brooker, ...
The Journal of nutrition 147 (9), 1739-1748, 2017
1502017
Effect of starvation on transcriptomes of brain and liver in adult female zebrafish (Danio rerio)
RE Drew, KJ Rodnick, M Settles, J Wacyk, E Churchill, MS Powell, ...
Physiological genomics 35 (3), 283-295, 2008
1382008
A Forward Genetic Screen Reveals that Calcium-dependent Protein Kinase 3 Regulates Egress in Toxoplasma
E Garrison, M Treeck, E Ehret, H Butz, T Garbuz, BP Oswald, M Settles, ...
PLoS pathogens 8 (11), e1003049, 2012
1332012
A whole genome association analysis identifies loci associated with Mycobacterium avium subsp. paratuberculosis infection status in US holstein cattle
M Settles, R Zanella, SD McKay, RD Schnabel, JF Taylor, R Whitlock, ...
Animal genetics 40 (5), 655-662, 2009
1322009
Genome-wide transcriptional response of Silurana (Xenopus) tropicalis to infection with the deadly chytrid fungus
EB Rosenblum, TJ Poorten, M Settles, GK Murdoch, J Robert, N Maddox, ...
PloS one 4 (8), e6494, 2009
1322009
Evolutionary paths that expand plasmid host-range: implications for spread of antibiotic resistance
W Loftie-Eaton, H Yano, S Burleigh, RS Simmons, JM Hughes, ...
Molecular biology and evolution 33 (4), 885-897, 2016
1262016
An Introduction to Particle Swarm Optimization
M Settles
Department of Computer Science, University of Idaho, 2005
1222005
Prenatal exposure to BPA alters the epigenome of the rat mammary gland and increases the propensity to neoplastic development
E Dhimolea, PR Wadia, TJ Murray, ML Settles, JD Treitman, ...
PloS one 9 (7), e99800, 2014
1122014
Only skin deep: shared genetic response to the deadly chytrid fungus in susceptible frog species
EB ROSENBLUM, TJ POORTEN, M SETTLES, GK MURDOCH
Molecular Ecology, 2012
1112012
Obesity treatment by epigallocatechin-3-gallate–regulated bile acid signaling and its enriched Akkermansia muciniphila
L Sheng, PK Jena, HX Liu, Y Hu, N Nagar, DN Bronner, ML Settles, ...
The FASEB Journal 32 (12), 6371, 2018
1022018
Transcriptome analysis of high‐temperature adult‐plant resistance conditioned by Yr39 during the wheat–Puccinia striiformis f. sp. tritici interaction
TE CORAM, ML SETTLES, X Chen
Molecular plant pathology 9 (4), 479-493, 2008
1012008
Soil bacterial communities of different natural forest types in Northeast China
H Li, D Ye, X Wang, ML Settles, J Wang, Z Hao, L Zhou, P Dong, Y Jiang, ...
Plant and Soil 383, 203-216, 2014
1002014
Sexual dimorphism in hepatic gene expression and the response to dietary carbohydrate manipulation in the zebrafish (Danio rerio)
BD Robison, RE Drew, GK Murdoch, M Powell, KJ Rodnick, M Settles, ...
Comparative Biochemistry and Physiology Part D: Genomics and Proteomics 3 (2 …, 2008
942008
Ultrahigh-throughput multiplexing and sequencing of> 500-base-pair amplicon regions on the Illumina HiSeq 2500 platform
JB Holm, MS Humphrys, CK Robinson, ML Settles, S Ott, L Fu, H Yang, ...
MSystems 4 (1), 10.1128/msystems. 00029-19, 2019
932019
Fecal microbial community structure is stable over time and related to variation in macronutrient and micronutrient intakes in lactating women
JM Carrothers, MA York, SL Brooker, KA Lackey, JE Williams, B Shafii, ...
The Journal of nutrition 145 (10), 2379-2388, 2015
832015
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Articles 1–20