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Paolo Manghi
Paolo Manghi
PhD, computational metagenomics lab, Dep. of Cellular, Computational and Integrative Biology
Verified email at unitn.it
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Cited by
Cited by
Year
Extensive unexplored human microbiome diversity revealed by over 150,000 genomes from metagenomes spanning age, geography, and lifestyle
E Pasolli, F Asnicar, S Manara, M Zolfo, N Karcher, F Armanini, F Beghini, ...
Cell 176 (3), 649-662. e20, 2019
11292019
Integrating taxonomic, functional, and strain-level profiling of diverse microbial communities with bioBakery 3
F Beghini, LJ McIver, A Blanco-Míguez, L Dubois, F Asnicar, S Maharjan, ...
elife 10, e65088, 2021
9032021
Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific for colorectal cancer
J Wirbel, PT Pyl, E Kartal, K Zych, A Kashani, A Milanese, JS Fleck, ...
Nature medicine 25 (4), 679-689, 2019
8122019
Metagenomic analysis of colorectal cancer datasets identifies cross-cohort microbial diagnostic signatures and a link with choline degradation
AM Thomas, P Manghi, F Asnicar, E Pasolli, F Armanini, M Zolfo, ...
Nature medicine 25 (4), 667-678, 2019
6322019
Precise phylogenetic analysis of microbial isolates and genomes from metagenomes using PhyloPhlAn 3.0
F Asnicar, AM Thomas, F Beghini, C Mengoni, S Manara, P Manghi, ...
Nature communications 11 (1), 2500, 2020
3722020
Accessible, curated metagenomic data through ExperimentHub
E Pasolli, L Schiffer, P Manghi, A Renson, V Obenchain, DT Truong, ...
Nature methods 14 (11), 1023-1024, 2017
3252017
The Prevotella copri complex comprises four distinct clades underrepresented in westernized populations
A Tett, KD Huang, F Asnicar, H Fehlner-Peach, E Pasolli, N Karcher, ...
Cell host & microbe 26 (5), 666-679. e7, 2019
3032019
Cross-cohort gut microbiome associations with immune checkpoint inhibitor response in advanced melanoma
KA Lee, AM Thomas, LA Bolte, JR Björk, LK de Ruijter, F Armanini, ...
Nature Medicine 28 (3), 535-544, 2022
1752022
Extending and improving metagenomic taxonomic profiling with uncharacterized species using MetaPhlAn 4
A Blanco-Míguez, F Beghini, F Cumbo, LJ McIver, KN Thompson, M Zolfo, ...
Nature Biotechnology, 1-12, 2023
1612023
The person-to-person transmission landscape of the gut and oral microbiomes
M Valles-Colomer, A Blanco-Míguez, P Manghi, F Asnicar, L Dubois, ...
Nature 614 (7946), 125-135, 2023
1092023
Variability of strain engraftment and predictability of microbiome composition after fecal microbiota transplantation across different diseases
G Ianiro, M Punčochář, N Karcher, S Porcari, F Armanini, F Asnicar, ...
Nature Medicine 28 (9), 1913-1923, 2022
902022
Detecting contamination in viromes using ViromeQC
M Zolfo, F Pinto, F Asnicar, P Manghi, A Tett, FD Bushman, N Segata
Nature biotechnology 37 (12), 1408-1412, 2019
782019
Analysis of 1321 Eubacterium rectale genomes from metagenomes uncovers complex phylogeographic population structure and subspecies functional adaptations
N Karcher, E Pasolli, F Asnicar, KD Huang, A Tett, S Manara, F Armanini, ...
Genome biology 21, 1-27, 2020
732020
Strong oral plaque microbiome signatures for dental implant diseases identified by strain-resolution metagenomics
P Ghensi, P Manghi, M Zolfo, F Armanini, E Pasolli, M Bolzan, A Bertelle, ...
npj Biofilms and Microbiomes 6 (1), 47, 2020
722020
Genomic diversity and ecology of human-associated Akkermansia species in the gut microbiome revealed by extensive metagenomic assembly
N Karcher, E Nigro, M Punčochář, A Blanco-Míguez, M Ciciani, P Manghi, ...
Genome biology 22 (1), 209, 2021
712021
Altered fecal small RNA profiles in colorectal cancer reflect gut microbiome composition in stool samples
S Tarallo, G Ferrero, G Gallo, A Francavilla, G Clerico, A Realis Luc, ...
Msystems 4 (5), 10.1128/msystems. 00289-19, 2019
612019
Microbial genomes from non-human primate gut metagenomes expand the primate-associated bacterial tree of life with over 1000 novel species
S Manara, F Asnicar, F Beghini, D Bazzani, F Cumbo, M Zolfo, E Nigro, ...
Genome biology 20 (1), 1-16, 2019
542019
Profiling microbial strains in urban environments using metagenomic sequencing data
M Zolfo, F Asnicar, P Manghi, E Pasolli, A Tett, N Segata
Biology direct 13 (1), 1-13, 2018
342018
Metagenomic analysis of ancient dental calculus reveals unexplored diversity of oral archaeal Methanobrevibacter
L Granehäll, KD Huang, A Tett, P Manghi, A Paladin, N O’Sullivan, ...
Microbiome 9 (1), 1-18, 2021
272021
Hallstatt miners consumed blue cheese and beer during the Iron Age and retained a non-Westernized gut microbiome until the Baroque period
F Maixner, MS Sarhan, KD Huang, A Tett, A Schoenafinger, S Zingale, ...
Current Biology 31 (23), 5149-5162. e6, 2021
242021
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