| From specific gene regulation to genomic networks: a global analysis of transcriptional regulation in Escherichia coli D Thieffry, AM Huerta, E Pérez‐Rueda, J Collado‐Vides Bioessays 20 (5), 433-440, 1998 | 641 | 1998 |
| RegulonDB version 9.0: high-level integration of gene regulation, coexpression, motif clustering and beyond S Gama-Castro, H Salgado, A Santos-Zavaleta, D Ledezma-Tejeida, ... Nucleic acids research 44 (D1), D133-D143, 2016 | 538 | 2016 |
| The repertoire of DNA-binding transcriptional regulators in Escherichia coli K-12 E Pérez-Rueda, J Collado-Vides Nucleic acids research 28 (8), 1838-1847, 2000 | 418 | 2000 |
| RegulonDB (version 3.2): transcriptional regulation and operon organization in Escherichia coli K-12 H Salgado, A Santos-Zavaleta, S Gama-Castro, D Millán-Zárate, ... Nucleic acids research 29 (1), 72-74, 2001 | 311 | 2001 |
| Identification of volatile compounds produced by the bacterium Burkholderia tropica that inhibit the growth of fungal pathogens S Tenorio-Salgado, R Tinoco, R Vazquez-Duhalt, J Caballero-Mellado, ... Bioengineered 4 (4), 236-243, 2013 | 143 | 2013 |
| Phylogenetic distribution of DNA-binding transcription factors in bacteria and archaea E Pérez-Rueda, J Collado-Vides, L Segovia Computational biology and chemistry 28 (5-6), 341-350, 2004 | 126 | 2004 |
| Common history at the origin of the position–function correlation in transcriptional regulators in archaea and bacteria E Pérez-Rueda, J Collado-Vides Journal of molecular evolution 53 (3), 172-179, 2001 | 108 | 2001 |
| Identification and analysis of DNA-binding transcription factors in Bacillus subtilis and other Firmicutes-a genomic approach S Moreno-Campuzano, SC Janga, E Pérez-Rueda BMC genomics 7 (1), 1-10, 2006 | 91 | 2006 |
| Identification and genomic analysis of transcription factors in archaeal genomes exemplifies their functional architecture and evolutionary origin E Pérez-Rueda, SC Janga Molecular biology and evolution 27 (6), 1449-1459, 2010 | 90 | 2010 |
| Global analysis of transcriptional regulators in Staphylococcus aureus JA Ibarra, E Pérez-Rueda, RK Carroll, LN Shaw BMC genomics 14 (1), 1-12, 2013 | 80 | 2013 |
| Abundance, diversity and domain architecture variability in prokaryotic DNA-binding transcription factors E Perez-Rueda, R Hernandez-Guerrero, MA Martinez-Nuñez, ... PloS one 13 (4), e0195332, 2018 | 72 | 2018 |
| Transcription unit conservation in the three domains of life: a perspective from Escherichia coli G Moreno-Hagelsieb, V Treviño, E Pérez-Rueda, TF Smith, ... TRENDS in Genetics 17 (4), 175-177, 2001 | 69 | 2001 |
| A network perspective on the evolution of metabolism by gene duplication JJ Díaz-Mejía, E Pérez-Rueda, L Segovia Genome biology 8 (2), 1-10, 2007 | 62 | 2007 |
| The DNA-binding domain as a functional indicator: the case of the AraC/XylS family of transcription factors JA Ibarra, E Pérez-Rueda, L Segovia, JL Puente Genetica 133 (1), 65-76, 2008 | 54 | 2008 |
| Biochemical characterization of recombinant L-asparaginase (AnsA) from Rhizobium etli, a member of an increasing rhizobial-type family of L-asparaginases A Moreno-Enriquez, Z Evangelista-Martínez, EG Gonzalez-Mondragon, ... Journal of microbiology and biotechnology 22 (3), 292-300, 2012 | 50 | 2012 |
| The hidden universal distribution of amino acid biosynthetic networks: a genomic perspective on their origins and evolution G Hernández-Montes, JJ Díaz-Mejía, E Pérez-Rueda, L Segovia Genome biology 9 (6), 1-15, 2008 | 50 | 2008 |
| The hidden universal distribution of amino acids biosynthetic networks: a genomic perspective on its origins and evolution G Hernandez-Montes, JJ Diaz-Mejia, E Perez-Rueda, L Segovia Genome Biol 9 (6), 0 | 50* | |
| Coiled‐coil domains enhance the membrane association of Salmonella type III effectors LA Knodler, JA Ibarra, E Pérez‐Rueda, CK Yip, O Steele‐Mortimer Cellular microbiology 13 (10), 1497-1517, 2011 | 49 | 2011 |
| Genomic position analyses and the transcription machinery E Pérez-Rueda, JD Gralla, J Collado-Vides Journal of molecular biology 275 (2), 165-170, 1998 | 48 | 1998 |
| Genome misclassification of Klebsiella variicola and Klebsiella quasipneumoniae isolated from plants, animals and humans E Martínez-Romero, N Rodríguez-Medina, M Beltrán-Rojel, ... salud pública de méxico 60, 56-62, 2018 | 45 | 2018 |
