| A Python library for probabilistic analysis of single-cell omics data A Gayoso, R Lopez, G Xing, P Boyeau, V Valiollah Pour Amiri, J Hong, ... Nature biotechnology 40 (2), 163-166, 2022 | 260 | 2022 |
| Modular, efficient and constant-memory single-cell RNA-seq preprocessing P Melsted, AS Booeshaghi, L Liu, F Gao, L Lu, KH Min, ... Nature biotechnology 39 (7), 813-818, 2021 | 256 | 2021 |
| A curated database reveals trends in single-cell transcriptomics V Svensson, E da Veiga Beltrame, L Pachter Database 2020, baaa073, 2020 | 177 | 2020 |
| WormBase in 2022—data, processes, and tools for analyzing Caenorhabditis elegans P Davis, M Zarowiecki, V Arnaboldi, A Becerra, S Cain, J Chan, WJ Chen, ... Genetics 220 (4), iyac003, 2022 | 143 | 2022 |
| Modular and efficient pre-processing of single-cell RNA-seq P Melsted, AS Booeshaghi, F Gao, E Beltrame, L Lu, KE Hjorleifsson, ... BioRxiv, 673285, 2019 | 91 | 2019 |
| Harmonizing model organism data in the Alliance of Genome Resources Genetics 220 (4), iyac022, 2022 | 58 | 2022 |
| Principles of open source bioinstrumentation applied to the poseidon syringe pump system AS Booeshaghi, EV Beltrame, D Bannon, J Gehring, L Pachter Scientific reports 9 (1), 12385, 2019 | 56 | 2019 |
| 3D printing of biomolecular models for research and pedagogy EDV Beltrame, J Tyrwhitt-Drake, I Roy, R Shalaby, J Suckale, ... JoVE (Journal of Visualized Experiments), e55427, 2017 | 37 | 2017 |
| Quantifying the tradeoff between sequencing depth and cell number in single-cell RNA-seq V Svensson, E da Veiga Beltrame, L Pachter BioRxiv, 762773, 2019 | 21 | 2019 |
| Deletion of Stk11 and Fos in mouse BLA projection neurons alters intrinsic excitability and impairs formation of long-term aversive memory D Levitan, C Liu, T Yang, Y Shima, JY Lin, J Wachutka, Y Marrero, ... Elife 9, e61036, 2020 | 11 | 2020 |
| Principles of open source bioinstrumentation applied to the poseidon syringe pump system. Sci Rep 9: 1–8 AS Booeshaghi, E da Veiga Beltrame, D Bannon, J Gehring, L Pachter | 8 | 2019 |
| Modular and efficient pre-processing of single-cell RNA-seq. bioRxiv, 673285 P Melsted, AS Booeshaghi, F Gao, E Beltrame, L Lu, KE Hjorleifsson, ... | 8 | 2019 |
| WormBase single-cell tools E da Veiga Beltrame, V Arnaboldi, PW Sternberg Bioinformatics Advances 2 (1), vbac018, 2022 | 6 | 2022 |
| Design principles for open source bioinstrumentation: the poseidon syringe pump system as an example A Sina Booeshaghi, E da Veiga Beltrame, D Bannon, J Gehring, ... BioRxiv, 521096, 2019 | 6 | 2019 |
| Modular and efficient pre-processing of single-cell RNA-seq. bioRxiv. 2019 P Melsted, AS Booeshaghi, F Gao, E Beltrame, L Lu, KE Hjorleifsson, ... Publisher Full Text, 0 | 6 | |
| Single-nucleus resolution mapping of the adult C. elegans and its application to elucidate inter-and trans-generational response to alcohol L Truong, YW Chen, R Barrere-Cain, MT Levenson, K Shuck, W Xiao, ... Cell reports 42 (6), 2023 | 4 | 2023 |
| Efficient combinatorial bead barcoding E da Veiga Beltrame, J Gehring, A Tambe, LS Pachter, T Dilanyan US Patent App. 16/586,592, 2020 | 2 | 2020 |
| implementação de um controlador fuzzy para conversor buck em microcontroldor AVR de 8 bits E da Veiga Beltrame, CA Petry, SA Mussa Revista Ilha Digital 3, 41-46, 2012 | 1 | 2012 |
| Defining and benchmarking open problems in single-cell analysis M Luecken, S Gigante, D Burkhardt, R Cannoodt, D Strobl, N Markov, ... | | 2024 |
| Author Correction: Principles of open source bioinstrumentation applied to the poseidon syringe pump system AS Booeshaghi, EV Beltrame, D Bannon, J Gehring, L Pachter Scientific Reports 13 (1), 14834, 2023 | | 2023 |
Lior PachterBren Professor of Computational Biology, CaltechEmail verificata su caltech.edu
