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| RowPress: Amplifying Read Disturbance in Modern DRAM Chips H Luo, A Olgun, AG Yağlıkçı, YC Tuğrul, S Rhyner, MB Cavlak, ... Proceedings of the 50th Annual International Symposium on Computer …, 2023 | 19 | 2023 |
| RawHash: enabling fast and accurate real-time analysis of raw nanopore signals for large genomes C Firtina, N Mansouri Ghiasi, J Lindegger, G Singh, MB Cavlak, H Mao, ... Bioinformatics 39 (Supplement_1), i297-i307, 2023 | 11 | 2023 |
| AirLift: A Fast and Comprehensive Technique for Remapping Alignments between Reference Genomes JS Kim, C Firtina, MB Cavlak, DS Cali, M Alser, N Hajinazar, C Alkan, ... arXiv preprint arXiv:1912.08735, 2019 | 11 | 2019 |
| A Framework for Designing Efficient Deep Learning-Based Genomic Basecallers G Singh, M Alser, A Khodamoradi, K Denolf, C Firtina, MB Cavlak, ... bioRxiv, 2022.11. 20.517297, 2022 | 6 | 2022 |
| FastRemap: a tool for quickly remapping reads between genome assemblies JS Kim, C Firtina, MB Cavlak, D Senol Cali, C Alkan, O Mutlu Bioinformatics 38 (19), 4633-4635, 2022 | 6 | 2022 |
| ApHMM: Accelerating profile hidden markov models for fast and energy-efficient genome analysis C Firtina, K Pillai, GS Kalsi, B Suresh, DS Cali, JS Kim, T Shahroodi, ... ACM Transactions on Architecture and Code Optimization, 2022 | 4 | 2022 |
| Targetcall: Eliminating the wasted computation in basecalling via pre-basecalling filtering MB Cavlak, G Singh, M Alser, C Firtina, J Lindegger, M Sadrosadati, ... arXiv preprint arXiv:2212.04953, 2022 | 3 | 2022 |
| RUBICON: a framework for designing efficient deep learning-based genomic basecallers G Singh, M Alser, K Denolf, C Firtina, A Khodamoradi, MB Cavlak, ... Genome Biology 25 (1), 1-29, 2024 | | 2024 |
| MetaStore: High-Performance Metagenomic Analysis via In-Storage Computing NM Ghiasi, M Sadrosadati, H Mustafa, A Gollwitzer, C Firtina, J Eudine, ... arXiv preprint arXiv:2311.12527, 2023 | | 2023 |
