| Dynamical properties of a Boolean model of gene regulatory network with memory A Graudenzi, R Serra, M Villani, C Damiani, A Colacci, SA Kauffman Journal of Computational Biology 18 (10), 1291-1303, 2011 | 52 | 2011 |
| Computational Strategies for a System-Level Understanding of Metabolism P Cazzaniga, C Damiani, D Besozzi, R Colombo, MS Nobile, D Gaglio, ... Metabolites 4 (4), 1034-1087, 2014 | 45 | 2014 |
| Cell-cell interaction and diversity of emergent behaviours C Damiani, R Serra, M Villani, SA Kauffman, A Colacci IET systems biology 5 (2), 137-144, 2011 | 33 | 2011 |
| The diffusion of perturbations in a model of coupled random boolean networks R Serra, M Villani, C Damiani, A Graudenzi, A Colacci Lecture Notes in Computer Science, 315-322, 2008 | 29 | 2008 |
| A metabolic core model elucidates how enhanced utilization of glucose and glutamine, with enhanced glutamine-dependent lactate production, promotes cancer cell growth: The … C Damiani, R Colombo, D Gaglio, F Mastroianni, D Pescini, ... PLoS computational biology 13 (9), e1005758, 2017 | 26 | 2017 |
| Zooming-in on cancer metabolic rewiring with tissue specific constraint-based models M Di Filippo, R Colombo, C Damiani, D Pescini, D Gaglio, M Vanoni, ... Computational biology and chemistry 62, 60-69, 2016 | 25 | 2016 |
| Information transfer among coupled random boolean networks C Damiani, SA Kauffman, R Serra, M Villani, A Colacci International Conference on Cellular Automata, 1-11, 2010 | 20 | 2010 |
| Growth and Division in a Dynamic Protocell Model M Villani, A Filisetti, A Graudenzi, C Damiani, T Carletti, R Serra Life 4 (4), 837-864, 2014 | 19 | 2014 |
| Interacting random boolean networks R Serra, M Villani, C Damiani, A Graudenzi, A Colacci, SA Kauffman Proceedings of ECCS07: European Conference on Complex Systems, 1-15, 2007 | 18 | 2007 |
| CABeRNET: a Cytoscape app for augmented Boolean models of gene regulatory NETworks A Paroni, A Graudenzi, G Caravagna, C Damiani, G Mauri, M Antoniotti BMC bioinformatics 17 (1), 64, 2016 | 16 | 2016 |
| An ensemble evolutionary constraint-based approach to understand the emergence of metabolic phenotypes C Damiani, D Pescini, R Colombo, S Molinari, L Alberghina, M Vanoni, ... Natural Computing 13 (3), 321-331, 2014 | 16 | 2014 |
| Integration of single-cell RNA-seq data into population models to characterize cancer metabolism C Damiani, D Maspero, M Di Filippo, R Colombo, D Pescini, A Graudenzi, ... PLoS computational biology 15 (2), e1006733, 2019 | 15 | 2019 |
| A stochastic model of catalytic reaction networks in protocells R Serra, A Filisetti, M Villani, A Graudenzi, C Damiani, T Panini Natural Computing 13 (3), 367-377, 2014 | 14 | 2014 |
| A stochastic model of catalytic reaction networks in protocells R Serra, A Filisetti, M Villani, A Graudenzi, C Damiani, T Panini Natural Computing 13 (3), 367-377, 2014 | 14 | 2014 |
| Parameter sensitivity analysis of stochastic models: Application to catalytic reaction networks C Damiani, A Filisetti, A Graudenzi, P Lecca Computational biology and chemistry 42, 5-17, 2013 | 13 | 2013 |
| popFBA: tackling intratumour heterogeneity with Flux Balance Analysis C Damiani, M Di Filippo, D Pescini, D Maspero, R Colombo, G Mauri Bioinformatics 33 (14), i311-i318, 2017 | 12 | 2017 |
| Integration of transcriptomic data and metabolic networks in cancer samples reveals highly significant prognostic power A Graudenzi, D Maspero, M Di Filippo, M Gnugnoli, C Isella, G Mauri, ... Journal of biomedical informatics, 2018 | 11 | 2018 |
| Dynamical regimes in non-ergodic random Boolean networks M Villani, D Campioli, C Damiani, A Roli, A Filisetti, R Serra Natural Computing 16 (2), 353-363, 2017 | 10 | 2017 |
| On RAF sets and autocatalytic cycles in random reaction networks A Filisetti, M Villani, C Damiani, A Graudenzi, A Roli, W Hordijk, R Serra Italian Workshop on Artificial Life and Evolutionary Computation, 113-126, 2014 | 10 | 2014 |
| Divergent in vitro/in vivo responses to drug treatments of highly aggressive NIH-Ras cancer cells: a PET imaging and metabolomics-mass-spectrometry study D Gaglio, S Valtorta, M Ripamonti, M Bonanomi, C Damiani, S Todde, ... Oncotarget 7 (32), 52017, 2016 | 9 | 2016 |
Alex GraudenziInstitute of Molecular Bioimaging and Physiology, Consiglio Nazionale delle Ricerche (IBFM-CNR)Verified email at unimib.it
