Chiara Damiani

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Citations	1155	806
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Alex GraudenziDept. of Informatics, Systems and Communication, Univ. of Milan-BicoccaVerified email at unimib.it
Giancarlo MauriProfessor emeritus of Computer Science - University of Milano-BicoccaVerified email at unimib.it
Roberto SERRAUniversità di Modena; European Centre for Living Technology, Venice; IAS, AmsterdamVerified email at unimore.it
Dario PesciniDepartment of Statistics and Quantitative Methods - University of Milano-BicoccaVerified email at unimib.it
Marco VILLANIUniversity of Modena and Reggio EmiliaVerified email at unimore.it
Marco VanoniUniversity of Milano Bicocca, Professor of Biochemistry and Systems BiologyVerified email at unimib.it
Riccardo ColomboBioRep S.r.l.Verified email at biorep.it
Marzia Di FilippoUniversity of Milano-BicoccaVerified email at unimib.it
Lilia AlberghinaEmeritus Professor of Biochemistry, University of Milano-BicoccaVerified email at unimib.it
Davide MasperoSingle Cell Genomics Team - Centre Nacional d’Anàlisi Genòmica (CNAG-CRG), Barcelona, SpainVerified email at cnag.crg.eu
Marco AntoniottiProfessor of Computer Science, Università degli Studi di Milano-BicoccaVerified email at unimib.it
Alessandro FilisettiCIO at Officinae Bio S.r.l.Verified email at officinae.bio
Hans WesterhoffUniversity of Amsterdam, VU University Amsterdam, University of ManchesterVerified email at manchester.ac.uk
Marco S. NobileAssociate Professor, Ca' Foscari University of VeniceVerified email at unive.it
Paolo CazzanigaAssociate Professor, University of BergamoVerified email at unibg.it
Elena SaccoUniversity of Milano-BicoccaVerified email at unimib.it
Sara Molinari, Ph.D.Assistant Professor, University of Maryland College ParkVerified email at umd.edu
Andrea RoliDept. of Computer Science and Engineering (DISI), Campus of Cesena, Università di BolognaVerified email at unibo.it
Giulio CaravagnaCancer Data Science Laboratory, University of TriesteVerified email at units.it
Daniela BesozziAssociate Professor, University of Milano-BicoccaVerified email at unimib.it

Chiara Damiani

Department of Biotechnology and Biosciences

Verified email at unimib.it - Homepage

Computational Systems Biology Metabolic Network modeling Omics data integration Single-cell RNAseq data analysis


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Integration of single-cell RNA-seq data into population models to characterize cancer metabolism C Damiani, D Maspero, M Di Filippo, R Colombo, D Pescini, A Graudenzi, ... PLoS computational biology 15 (2), e1006733, 2019	92	2019
A metabolic core model elucidates how enhanced utilization of glucose and glutamine, with enhanced glutamine-dependent lactate production, promotes cancer cell growth: The … C Damiani, R Colombo, D Gaglio, F Mastroianni, D Pescini, ... PLoS computational biology 13 (9), e1005758, 2017	88	2017
Dynamical properties of a Boolean model of gene regulatory network with memory A Graudenzi, R Serra, M Villani, C Damiani, A Colacci, SA Kauffman Journal of Computational Biology 18 (10), 1291-1303, 2011	72	2011
Computational strategies for a system-level understanding of metabolism P Cazzaniga, C Damiani, D Besozzi, R Colombo, MS Nobile, D Gaglio, ... Metabolites 4 (4), 1034-1087, 2014	64	2014
Systems metabolomics: From metabolomic snapshots to design principles C Damiani, D Gaglio, E Sacco, L Alberghina, M Vanoni Current opinion in biotechnology 63, 190-199, 2020	54	2020
Tumor heterogeneity: preclinical models, emerging technologies, and future applications M Proietto, M Crippa, C Damiani, V Pasquale, E Sacco, M Vanoni, ... Frontiers in Oncology 13, 1164535, 2023	40	2023
Zooming-in on cancer metabolic rewiring with tissue specific constraint-based models M Di Filippo, R Colombo, C Damiani, D Pescini, D Gaglio, M Vanoni, ... Computational biology and chemistry 62, 60-69, 2016	39	2016
Cell–cell interaction and diversity of emergent behaviours C Damiani, R Serra, M Villani, SA Kauffman, A Colacci IET systems biology 5 (2), 137-144, 2011	38	2011
INTEGRATE: Model-based multi-omics data integration to characterize multi-level metabolic regulation M Di Filippo, D Pescini, BG Galuzzi, M Bonanomi, D Gaglio, E Mangano, ... PLoS computational biology 18 (2), e1009337, 2022	37	2022
Dynamical criticality in gene regulatory networks M Villani, L La Rocca, SA Kauffman, R Serra Complexity 2018 (1), 5980636, 2018	36	2018
Integration of transcriptomic data and metabolic networks in cancer samples reveals highly significant prognostic power A Graudenzi, D Maspero, M Di Filippo, M Gnugnoli, C Isella, G Mauri, ... Journal of biomedical informatics, 2018	32	2018
popFBA: tackling intratumour heterogeneity with Flux Balance Analysis C Damiani, M Di Filippo, D Pescini, D Maspero, R Colombo, G Mauri Bioinformatics 33 (14), i311-i318, 2017	31	2017
The diffusion of perturbations in a model of coupled random boolean networks R Serra, M Villani, C Damiani, A Graudenzi, A Colacci Lecture Notes in Computer Science, 315-322, 2008	30	2008
Growth and division in a dynamic protocell model M Villani, A Filisetti, A Graudenzi, C Damiani, T Carletti, R Serra Life 4 (4), 837-864, 2014	29	2014
Single-cell digital twins for cancer preclinical investigation MD Filippo, C Damiani, M Vanoni, D Maspero, G Mauri, L Alberghina, ... Metabolic Flux Analysis in Eukaryotic Cells: Methods and Protocols, 331-343, 2020	27	2020
CABeRNET: a Cytoscape app for augmented Boolean models of gene regulatory NETworks A Paroni, A Graudenzi, G Caravagna, C Damiani, G Mauri, M Antoniotti BMC bioinformatics 17, 1-12, 2016	23	2016
Information transfer among coupled random boolean networks C Damiani, SA Kauffman, R Serra, M Villani, A Colacci Cellular Automata: 9th International Conference on Cellular Automata for …, 2010	23	2010
GPRuler: Metabolic gene-protein-reaction rules automatic reconstruction M Di Filippo, C Damiani, D Pescini PLoS computational biology 17 (11), e1009550, 2021	22	2021
An ensemble evolutionary constraint-based approach to understand the emergence of metabolic phenotypes C Damiani, D Pescini, R Colombo, S Molinari, L Alberghina, M Vanoni, ... Natural Computing 13 (3), 321-331, 2014	22	2014
Interacting random boolean networks R Serra, M Villani, C Damiani, A Graudenzi, A Colacci, SA Kauffman Proceedings of ECCS07: European Conference on Complex Systems, 1-15, 2007	21	2007

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