Chiara Damiani

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Citations	689	505
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Alex GraudenziDept. of Informatics, Systems and Communication, Univ. of Milan-BicoccaVerified email at unimib.it
Roberto SERRAUniversità di Modena; European Centre for Living Technology, Venice;Verified email at unimore.it
Marco VILLANIUniversity of Modena and Reggio EmiliaVerified email at unimore.it
Giancarlo MauriProfessor of Computer Science - University of Milano-BicoccaVerified email at disco.unimib.it
Dario PesciniDepartment of Statistics and Quantitative Methods - University of Milano-BicoccaVerified email at unimib.it
Riccardo ColomboBioRep S.r.l.Verified email at biorep.it
Marco VanoniVerified email at unimib.it
Marzia Di FilippoUniversity of Milano-BicoccaVerified email at unimib.it
Lilia AlberghinaEmeritus Professor of Biochemistry, University of Milano-BicoccaVerified email at unimib.it
Davide MasperoSingle Cell Genomics Team - Centre Nacional d’Anàlisi Genòmica (CNAG-CRG), Barcelona, SpainVerified email at cnag.crg.eu
Annamaria ColacciDirigente Arpa Emilia Romafna- Verified email at unibo.it
Alessandro FilisettiExplora Biotech Srl - Double Helix Technologies (DOULIX)Verified email at explora-biotech.com
Marco AntoniottiProfessor of Computer Science, Università degli Studi di Milano-BicoccaVerified email at unimib.it
Marco S. NobileAssociate Professor, Ca' Foscari University of VeniceVerified email at unive.it
Andrea RoliDept. of Computer Science and Engineering (DISI), Campus of Cesena, Università di BolognaVerified email at unibo.it
Hans WesterhoffUniversity of Amsterdam, VU University Amsterdam, University of ManchesterVerified email at manchester.ac.uk
Sara MolinariPostdoctoral Research Associate - Rice UniversityVerified email at rice.edu
Paolo CazzanigaAssociate Professor, University of BergamoVerified email at unibg.it
Giulio CaravagnaCancer Data Science Laboratory, University of TriesteVerified email at units.it
Daniela BesozziAssociate Professor, University of Milano-BicoccaVerified email at unimib.it

Chiara Damiani

Department of Biotechnology and Biosciences

Verified email at unimib.it - Homepage

Computational Systems Biology Metabolic Network modeling Omics data integration Single-cell RNAseq data analysis


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Dynamical properties of a Boolean model of gene regulatory network with memory A Graudenzi, R Serra, M Villani, C Damiani, A Colacci, SA Kauffman Journal of Computational Biology 18 (10), 1291-1303, 2011	60	2011
Computational strategies for a system-level understanding of metabolism P Cazzaniga, C Damiani, D Besozzi, R Colombo, MS Nobile, D Gaglio, ... Metabolites 4 (4), 1034-1087, 2014	56	2014
A metabolic core model elucidates how enhanced utilization of glucose and glutamine, with enhanced glutamine-dependent lactate production, promotes cancer cell growth: The … C Damiani, R Colombo, D Gaglio, F Mastroianni, D Pescini, ... PLoS computational biology 13 (9), e1005758, 2017	46	2017
Integration of single-cell RNA-seq data into population models to characterize cancer metabolism C Damiani, D Maspero, M Di Filippo, R Colombo, D Pescini, A Graudenzi, ... PLoS computational biology 15 (2), e1006733, 2019	39	2019
Zooming-in on cancer metabolic rewiring with tissue specific constraint-based models M Di Filippo, R Colombo, C Damiani, D Pescini, D Gaglio, M Vanoni, ... Computational biology and chemistry 62, 60-69, 2016	34	2016
Cell–cell interaction and diversity of emergent behaviours C Damiani, R Serra, M Villani, SA Kauffman, A Colacci IET systems biology 5 (2), 137-144, 2011	34	2011
The diffusion of perturbations in a model of coupled random boolean networks R Serra, M Villani, C Damiani, A Graudenzi, A Colacci Lecture Notes in Computer Science, 315-322, 2008	30	2008
Systems metabolomics: From metabolomic snapshots to design principles C Damiani, D Gaglio, E Sacco, L Alberghina, M Vanoni Current opinion in biotechnology 63, 190-199, 2020	25	2020
Dynamical criticality in gene regulatory networks M Villani, L La Rocca, SA Kauffman, R Serra Complexity 2018, 2018	22	2018
popFBA: tackling intratumour heterogeneity with Flux Balance Analysis C Damiani, M Di Filippo, D Pescini, D Maspero, R Colombo, G Mauri Bioinformatics 33 (14), i311-i318, 2017	21	2017
Growth and division in a dynamic protocell model M Villani, A Filisetti, A Graudenzi, C Damiani, T Carletti, R Serra Life 4 (4), 837-864, 2014	21	2014
Information transfer among coupled random boolean networks C Damiani, SA Kauffman, R Serra, M Villani, A Colacci International Conference on Cellular Automata, 1-11, 2010	21	2010
Integration of transcriptomic data and metabolic networks in cancer samples reveals highly significant prognostic power A Graudenzi, D Maspero, M Di Filippo, M Gnugnoli, C Isella, G Mauri, ... Journal of biomedical informatics, 2018	19	2018
An ensemble evolutionary constraint-based approach to understand the emergence of metabolic phenotypes C Damiani, D Pescini, R Colombo, S Molinari, L Alberghina, M Vanoni, ... Natural Computing 13 (3), 321-331, 2014	19	2014
Interacting random boolean networks R Serra, M Villani, C Damiani, A Graudenzi, A Colacci, SA Kauffman Proceedings of ECCS07: European Conference on Complex Systems, 1-15, 2007	19	2007
Parameter sensitivity analysis of stochastic models: Application to catalytic reaction networks C Damiani, A Filisetti, A Graudenzi, P Lecca Computational biology and chemistry 42, 5-17, 2013	18	2013
CABeRNET: a Cytoscape app for augmented Boolean models of gene regulatory NETworks A Paroni, A Graudenzi, G Caravagna, C Damiani, G Mauri, M Antoniotti BMC bioinformatics 17 (1), 1-12, 2016	17	2016
Dynamical regimes in non-ergodic random Boolean networks M Villani, D Campioli, C Damiani, A Roli, A Filisetti, R Serra Natural Computing 16 (2), 353-363, 2017	14	2017
Divergent in vitro/in vivo responses to drug treatments of highly aggressive NIH-Ras cancer cells: a PET imaging and metabolomics-mass-spectrometry study D Gaglio, S Valtorta, M Ripamonti, M Bonanomi, C Damiani, S Todde, ... Oncotarget 7 (32), 52017, 2016	13	2016
A stochastic model of catalytic reaction networks in protocells R Serra, A Filisetti, M Villani, A Graudenzi, C Damiani, T Panini Natural Computing 13 (3), 367-377, 2014	13	2014

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