Shaun D. Jackman
Shaun D. Jackman
10x Genomics
Verified email at 10xgenomics.com - Homepage
Title
Cited by
Cited by
Year
ABySS: a parallel assembler for short read sequence data
JT Simpson, K Wong, SD Jackman, JE Schein, SJM Jones, İ Birol
Genome research 19 (6), 1117-1123, 2009
33362009
Frequent mutation of histone-modifying genes in non-Hodgkin lymphoma
RD Morin, M Mendez-Lago, AJ Mungall, R Goya, KL Mungall, RD Corbett, ...
Nature 476 (7360), 298-303, 2011
13962011
De novo assembly and analysis of RNA-seq data
G Robertson, J Schein, R Chiu, R Corbett, M Field, SD Jackman, ...
Nature methods 7 (11), 909-912, 2010
9112010
The genetic landscape of high-risk neuroblastoma
TJ Pugh, O Morozova, EF Attiyeh, S Asgharzadeh, JS Wei, D Auclair, ...
Nature genetics 45 (3), 279-284, 2013
7462013
Subgroup-specific structural variation across 1,000 medulloblastoma genomes
PA Northcott, DJH Shih, J Peacock, L Garzia, AS Morrissy, T Zichner, ...
Nature 488 (7409), 49-56, 2012
6772012
Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species
KR Bradnam, JN Fass, A Alexandrov, P Baranay, M Bechner, I Birol, ...
GigaScience 2 (1), 2047-217X-2-10, 2013
6252013
Assemblathon 1: a competitive assessment of de novo short read assembly methods
D Earl, K Bradnam, JS John, A Darling, D Lin, J Fass, HOK Yu, V Buffalo, ...
Genome research 21 (12), 2224-2241, 2011
5292011
De novo transcriptome assembly with ABySS
I Birol, SD Jackman, CB Nielsen, JQ Qian, R Varhol, G Stazyk, RD Morin, ...
Bioinformatics 25 (21), 2872-2877, 2009
4612009
Assembling the 20 Gb white spruce (Picea glauca) genome from whole-genome shotgun sequencing data
I Birol, A Raymond, SD Jackman, S Pleasance, R Coope, GA Taylor, ...
Bioinformatics 29 (12), 1492-1497, 2013
3352013
ABySS 2.0: resource-efficient assembly of large genomes using a Bloom filter
SD Jackman, BP Vandervalk, H Mohamadi, J Chu, S Yeo, SA Hammond, ...
Genome research 27 (5), 768-777, 2017
2772017
Concurrent CIC mutations, IDH mutations and 1p/19q loss distinguish oligodendrogliomas from other cancers
S Yip, YS Butterfield, O Morozova, S Chittaranjan, MD Blough, J An, I Birol, ...
The Journal of Pathology 226 (1), 7-16, 2012
2672012
Draft genome of the mountain pine beetle, Dendroctonus ponderosae Hopkins, a major forest pest
CI Keeling, MMS Yuen, NY Liao, TR Docking, SK Chan, GA Taylor, ...
Genome biology 14 (3), R27, 2013
2282013
Improved white spruce (Picea glauca) genome assemblies and annotation of large gene families of conifer terpenoid and phenolic defense metabolism
RL Warren, CI Keeling, MMS Yuen, A Raymond, GA Taylor, ...
The Plant Journal 83 (2), 189-212, 2015
1472015
On the representation of de Bruijn graphs
R Chikhi, A Limasset, S Jackman, JT Simpson, P Medvedev
Research in Computational Molecular Biology 8394, 35-55, 2014
1162014
Sealer: a scalable gap-closing application for finishing draft genomes
D Paulino, RL Warren, BP Vandervalk, A Raymond, SD Jackman, I Birol
BMC bioinformatics 16 (1), 1-8, 2015
912015
ABySS-Explorer: visualizing genome sequence assemblies
CB Nielsen, SD Jackman, I Birol, SJM Jones
IEEE Transactions on Visualization and Computer Graphics 15 (6), 881-888, 2009
822009
Whole genome duplication and enrichment of metal cation transporters revealed by de novo genome sequencing of extremely halotolerant black yeast Hortaea werneckii
M Lenassi, C Gostinčar, S Jackman, M Turk, I Sadowski, C Nislow, ...
PLoS One 8 (8), e71328, 2013
792013
BioBloom tools: fast, accurate and memory-efficient host species sequence screening using bloom filters
J Chu, S Sadeghi, A Raymond, SD Jackman, KM Nip, R Mar, ...
Bioinformatics 30 (23), 3402-3404, 2014
642014
The genome and transcriptome of the pine saprophyte Ophiostoma piceae, and a comparison with the bark beetle-associated pine pathogen Grosmannia clavigera
S Haridas, Y Wang, L Lim, SM Alamouti, S Jackman, R Docking, ...
BMC genomics 14 (1), 373, 2013
502013
Updated genome assembly and annotation of Paenibacillus larvae, the agent of American foulbrood disease of honey bees
Q Chan, RS Cornman, I Birol, N Liao, S Chan, TR Docking, S Jackman, ...
BMC genomics 12 (1), 450-464, 2011
422011
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