Francesco Paolo Casale
Francesco Paolo Casale
Microsoft Research
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Cited by
Cited by
An integrated map of structural variation in 2,504 human genomes
PH Sudmant, T Rausch, EJ Gardner, RE Handsaker, A Abyzov, ...
Nature 526 (7571), 75-81, 2015
Computational analysis of cell-to-cell heterogeneity in single-cell RNA-sequencing data reveals hidden subpopulations of cells
F Buettner, KN Natarajan, FP Casale, V Proserpio, A Scialdone, FJ Theis, ...
Nature biotechnology 33 (2), 155, 2015
Genome-wide association study in Asian populations identifies variants in ETS1 and WDFY4 associated with systemic lupus erythematosus
W Yang, N Shen, DQ Ye, Q Liu, Y Zhang, XX Qian, N Hirankarn, D Ying, ...
PLoS genetics 6 (2), 2010
DNA methylation in Arabidopsis has a genetic basis and shows evidence of local adaptation
MJ Dubin, P Zhang, D Meng, MS Remigereau, EJ Osborne, FP Casale, ...
elife 4, e05255, 2015
Genetic drivers of epigenetic and transcriptional variation in human immune cells
L Chen, B Ge, FP Casale, L Vasquez, T Kwan, D Garrido-Martín, S Watt, ...
Cell 167 (5), 1398-1414. e24, 2016
Common genetic variation drives molecular heterogeneity in human iPSCs
H Kilpinen, A Goncalves, A Leha, V Afzal, K Alasoo, S Ashford, S Bala, ...
Nature 546 (7658), 370-375, 2017
Efficient set tests for the genetic analysis of correlated traits
FP Casale, B Rakitsch, C Lippert, O Stegle
Nature methods 12 (8), 755-758, 2015
Genome-wide analysis of differential transcriptional and epigenetic variability across human immune cell types
S Ecker, L Chen, V Pancaldi, FO Bagger, JM Fernández, ...
Genome biology 18 (1), 18, 2017
LIMIX: genetic analysis of multiple traits
C Lippert, FP Casale, B Rakitsch, O Stegle
BioRxiv, 2014
Genetic variation in the social environment contributes to health and disease
A Baud, MK Mulligan, FP Casale, JF Ingels, CJ Bohl, J Callebert, ...
PLoS genetics 13 (1), 2017
Promoter shape varies across populations and affects promoter evolution and expression noise
IE Schor, JF Degner, D Harnett, E Cannavň, FP Casale, H Shim, ...
Nature genetics 49 (4), 550, 2017
Genetic variants regulating expression levels and isoform diversity during embryogenesis
E Cannavň, N Koelling, D Harnett, D Garfield, FP Casale, L Ciglar, ...
Nature 541 (7637), 402-406, 2017
A linear mixed-model approach to study multivariate gene–environment interactions
R Moore, FP Casale, MJ Bonder, D Horta, L Franke, I Barroso, O Stegle
Nature genetics 51 (1), 180-186, 2019
Gaussian process prior variational autoencoders
FP Casale, A Dalca, L Saglietti, J Listgarten, N Fusi
Advances in Neural Information Processing Systems, 10369-10380, 2018
Probabilistic neural architecture search
FP Casale, J Gordon, N Fusi
arXiv preprint arXiv:1902.05116, 2019
The germline genetic component of drug sensitivity in cancer cell lines
MP Menden, FP Casale, J Stephan, GR Bignell, F Iorio, U McDermott, ...
Nature communications 9 (1), 1-8, 2018
Joint genetic analysis using variant sets reveals polygenic gene-context interactions
FP Casale, D Horta, B Rakitsch, O Stegle
PLoS genetics 13 (4), 2017
Superhydrophobic lab-on-chip measures secretome protonation state and provides a personalized risk assessment of sporadic tumour
N Malara, F Gentile, N Coppedč, ML Coluccio, P Candeloro, ...
NPJ precision oncology 2 (1), 1-13, 2018
Genome-wide association study of social genetic effects on 170 phenotypes in laboratory mice
A Baud, FP Casale, J Nicod, O Stegle
BioRxiv, 302349, 2018
Interactions between genetic variation and cellular environment in skeletal muscle gene expression
DL Taylor, DA Knowles, LJ Scott, AH Ramirez, FP Casale, BN Wolford, ...
PloS one 13 (4), 2018
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