| GC bias affects genomic and metagenomic reconstructions, underrepresenting GC-poor organisms PD Browne, TK Nielsen, W Kot, A Aggerholm, MTP Gilbert, L Puetz, ... GigaScience 9 (2), giaa008, 2020 | 105 | 2020 |
| Gasification biochar has limited effects on functional and structural diversity of soil microbial communities in a temperate agroecosystem V Imparato, V Hansen, SS Santos, TK Nielsen, L Giagnoni, ... Soil Biology and Biochemistry 99, 128-136, 2016 | 61 | 2016 |
| Establishment of bacterial herbicide degraders in a rapid sand filter for bioremediation of phenoxypropionate-polluted groundwater L Feld, TK Nielsen, LH Hansen, J Aamand, CN Albers Applied and environmental microbiology 82 (3), 878-887, 2016 | 59 | 2016 |
| Use of WGS data for investigation of a long-term NDM-1-producing Citrobacter freundii outbreak and secondary in vivo spread of bla NDM-1 to Escherichia coli, Klebsiella … AM Hammerum, F Hansen, HL Nielsen, L Jakobsen, M Stegger, ... Journal of Antimicrobial Chemotherapy 71 (11), 3117-3124, 2016 | 58 | 2016 |
| Metagenomic analysis of planktonic riverine microbial consortia using nanopore sequencing reveals insight into river microbe taxonomy and function K Reddington, D Eccles, J O'Grady, DM Drown, LH Hansen, TK Nielsen, ... GigaScience 9 (6), giaa053, 2020 | 48* | 2020 |
| Comparison of three DNA extraction methods for recovery of soil protist DNA SS Santos, TK Nielsen, LH Hansen, A Winding Journal of Microbiological Methods 115, 13-19, 2015 | 46 | 2015 |
| Mind the gut: genomic insights to population divergence and gut microbial composition of two marine keystone species K Fietz, CO Rye Hintze, M Skovrind, T Kjærgaard Nielsen, MT Limborg, ... Microbiome 6, 1-16, 2018 | 41* | 2018 |
| Aeromonas salmonicida subsp. salmonicida strains isolated from Chinese freshwater fish contain a novel genomic island and possible regional-specific mobile … M Long, TK Nielsen, JJ Leisner, LH Hansen, ZX Shen, QQ Zhang, A Li FEMS Microbiology Letters 363 (17), fnw190, 2016 | 40 | 2016 |
| Land use as a driver for protist community structure in soils under agricultural use across Europe SS Santos, A Schöler, TK Nielsen, LH Hansen, M Schloter, A Winding Science of the total environment 717, 137228, 2020 | 39 | 2020 |
| Evolution of Sphingomonad Gene Clusters Related to Pesticide Catabolism Revealed by Genome Sequence and Mobilomics of Sphingobium herbicidovorans MH TK Nielsen, M Rasmussen, S Demanèche, S Cecillon, TM Vogel, ... Genome Biology and Evolution 9 (9), 2477-2490, 2017 | 37 | 2017 |
| Novel insight into the genetic context of the cadAB genes from a 4-chloro-2-methylphenoxyacetic acid-degrading Sphingomonas TK Nielsen, Z Xu, E Gözdereliler, J Aamand, LH Hansen, SR Sørensen PLoS One 8 (12), e83346, 2013 | 36 | 2013 |
| Degradation of mecoprop in polluted landfill leachate and waste water in a moving bed biofilm reactor M Escola, TK Nielsen, W Kot, LH Hansen, A Johansen, K Bester Water research 121, 213-220, 2017 | 34 | 2017 |
| Bone biodeterioration—the effect of marine and terrestrial depositional environments on early diagenesis and bone bacterial community AMH Eriksen, TK Nielsen, H Matthiesen, C Carøe, LH Hansen, ... Plos one 15 (10), e0240512, 2020 | 25 | 2020 |
| Expanding the biodiversity of Oenococcus oeni through comparative genomics of apple cider and kombucha strains MP Lorentzen, H Campbell-Sills, TS Jorgensen, TK Nielsen, M Coton, ... BMC genomics 20, 1-15, 2019 | 25 | 2019 |
| Detection of preQ0 deazaguanine modifications in bacteriophage CAjan DNA using Nanopore sequencing reveals same hypermodification at two distinct DNA motifs W Kot, NS Olsen, TK Nielsen, G Hutinet, V de Crécy-Lagard, L Cui, ... Nucleic acids research 48 (18), 10383-10396, 2020 | 23 | 2020 |
| Potential rhodopsin-and bacteriochlorophyll-based dual phototrophy in a high Arctic glacier Y Zeng, X Chen, AM Madsen, A Zervas, TK Nielsen, AS Andrei, ... mbio 11 (6), 10.1128/mbio. 02641-20, 2020 | 20 | 2020 |
| Soil DNA extraction procedure influences protist 18S rRNA gene community profiling outcome SS Santos, I Nunes, TK Nielsen, S Jacquiod, LH Hansen, A Winding Protist 168 (3), 283-293, 2017 | 19 | 2017 |
| The first characterized phage against a member of the ecologically important sphingomonads reveals high dissimilarity against all other known phages TK Nielsen, AB Carstens, P Browne, R Lametsch, H Neve, W Kot, ... Scientific Reports 7 (1), 13566, 2017 | 18 | 2017 |
| The Bacillus cereus Strain EC9 Primes the Plant Immune System for Superior Biocontrol of Fusarium oxysporum K Madriz-Ordeñana, S Pazarlar, HJL Jørgensen, TK Nielsen, Y Zhang, ... Plants 11 (5), 687, 2022 | 16 | 2022 |
| Antibiotic resistance genes are differentially mobilized according to resistance mechanism TK Nielsen, PD Browne, LH Hansen GigaScience 11, 2022 | 15* | 2022 |
