Michele Seeber
Michele Seeber
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Wordom: a program for efficient analysis of molecular dynamics simulations
M Seeber, M Cecchini, F Rao, G Settanni, A Caflisch
Bioinformatics 23 (19), 2625-2627, 2007
Wordom: A user‐friendly program for the analysis of molecular structures, trajectories, and free energy surfaces
M Seeber, A Felline, F Raimondi, S Muff, R Friedman, F Rao, A Caflisch, ...
Journal of computational chemistry 32 (6), 1183-1194, 2011
Replica exchange molecular dynamics simulations of amyloid peptide aggregation
M Cecchini, F Rao, M Seeber, A Caflisch
The Journal of chemical physics 121 (21), 10748-10756, 2004
Mapping and fitting the peripheral benzodiazepine receptor binding site by carboxamide derivatives. Comparison of different approaches to quantitative ligand− receptor …
M Anzini, A Cappelli, S Vomero, M Seeber, MC Menziani, T Langer, ...
Journal of medicinal chemistry 44 (8), 1134-1150, 2001
Synthesis, Screening, and Molecular Modeling of New Potent and Selective Antagonists at the α1d Adrenergic Receptor
A Leonardi, D Barlocco, F Montesano, G Cignarella, G Motta, R Testa, ...
Journal of medicinal chemistry 47 (8), 1900-1918, 2004
A mixed protein structure network and elastic network model approach to predict the structural communication in biomolecular systems: the PDZ2 domain from tyrosine phosphatase …
F Raimondi, A Felline, M Seeber, S Mariani, F Fanelli
Journal of chemical theory and computation 9 (5), 2504-2518, 2013
webPSN v2. 0: a webserver to infer fingerprints of structural communication in biomacromolecules
A Felline, M Seeber, F Fanelli
Nucleic acids research 48 (W1), W94-W103, 2020
WebPSN: a web server for high-throughput investigation of structural communication in biomacromolecules
M Seeber, A Felline, F Raimondi, S Mariani, F Fanelli
Bioinformatics 31 (5), 779-781, 2015
Quaternary structure predictions of transmembrane proteins starting from the monomer: a docking-based approach
D Casciari, M Seeber, F Fanelli
BMC bioinformatics 7 (1), 1-16, 2006
Structural insights into retinitis pigmentosa from unfolding simulations of rhodopsin mutants
F Fanelli, M Seeber
The FASEB Journal 24 (9), 3196-3209, 2010
Mechanisms of inter-and intramolecular communication in GPCRs and G proteins
F Raimondi, M Seeber, PG De Benedetti, F Fanelli
Journal of the American Chemical Society 130 (13), 4310-4325, 2008
Molecular Dynamics Simulations of the Ligand-Induced Chemical Information Transfer in the 5-HT1A Receptor
M Seeber, PG De Benedetti, F Fanelli
Journal of chemical information and computer sciences 43 (5), 1520-1531, 2003
Small-Molecule Protein-Protein Interaction Inhibitor of Oncogenic Rho Signaling
D Diviani, F Raimondi, CD Del Vescovo, E Dreyer, E Reggi, H Osman, ...
Cell chemical biology 23 (9), 1135-1146, 2016
Monomeric dark rhodopsin holds the molecular determinants for transducin recognition: insights from computational analysis
D Dell’Orco, M Seeber, F Fanelli
FEBS letters 581 (5), 944-948, 2007
Computational modeling of intramolecular and intermolecular communication in GPCRs
F Fanelli, PG De Benedetti, F Raimondi, M Seeber
Current Protein and Peptide Science 10 (2), 173-185, 2009
Structure network analysis to gain insights into GPCR function
F Fanelli, A Felline, F Raimondi, M Seeber
Biochemical Society Transactions 44 (2), 613-618, 2016
PSNtools for standalone and web-based structure network analyses of conformational ensembles
A Felline, M Seeber, F Fanelli
Computational and Structural Biotechnology Journal 20, 640-649, 2022
Bulky side chains and non-native salt bridges slow down the folding of a cross-linked helical peptide: a combined molecular dynamics and time-resolved infrared spectroscopy study
B Paoli, M Seeber, EHG Backus, JA Ihalainen, P Hamm, A Caflisch
The Journal of Physical Chemistry B 113 (13), 4435-4442, 2009
Probing fragment complementation by rigid-body docking: in silico reconstitution of calbindin D9k
D Dell'Orco, M Seeber, PG De Benedetti, F Fanelli
Journal of chemical information and modeling 45 (5), 1429-1438, 2005
Sequential unfolding of individual helices of bacterioopsin observed in molecular dynamics simulations of extraction from the purple membrane
M Seeber, F Fanelli, E Paci, A Caflisch
Biophysical journal 91 (9), 3276-3284, 2006
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