| Next-generation VariationHunter: combinatorial algorithms for transposon insertion discovery F Hormozdiari, I Hajirasouliha, P Dao, F Hach, D Yorukoglu, C Alkan, ... Bioinformatics 26 (12), i350-i357, 2010 | 272 | 2010 |
| Alu repeat discovery and characterization within human genomes F Hormozdiari, C Alkan, M Ventura, I Hajirasouliha, M Malig, F Hach, ... Genome research 21 (6), 840-849, 2011 | 116 | 2011 |
| HapTree: a novel Bayesian framework for single individual polyplotyping using NGS data E Berger, D Yorukoglu, J Peng, B Berger PLoS computational biology 10 (3), e1003502, 2014 | 104 | 2014 |
| Quality score compression improves genotyping accuracy YW Yu, D Yorukoglu, J Peng, B Berger Nature biotechnology 33 (3), 240-243, 2015 | 73 | 2015 |
| Fast genotyping of known SNPs through approximate k-mer matching A Shajii, D Yorukoglu, Y William Yu, B Berger Bioinformatics 32 (17), i538-i544, 2016 | 56 | 2016 |
| Compressive mapping for next-generation sequencing D Yorukoglu, YW Yu, J Peng, B Berger Nature biotechnology 34 (4), 374-376, 2016 | 45 | 2016 |
| Dissect: detection and characterization of novel structural alterations in transcribed sequences D Yorukoglu, F Hach, L Swanson, CC Collins, I Birol, SC Sahinalp Bioinformatics 28 (12), i179-i187, 2012 | 28 | 2012 |
| Traversing the k-mer Landscape of NGS Read Datasets for Quality Score Sparsification YW Yu, D Yorukoglu, B Berger Research in Computational Molecular Biology: 18th Annual International …, 2014 | 27 | 2014 |
| Improved haplotype inference by exploiting long-range linking and allelic imbalance in RNA-seq datasets E Berger, D Yorukoglu, L Zhang, SK Nyquist, AK Shalek, M Kellis, ... Nature communications 11 (1), 4662, 2020 | 19 | 2020 |
| Barnacle: detecting and characterizing tandem duplications and fusions in transcriptome assemblies L Swanson, G Robertson, KL Mungall, YS Butterfield, R Chiu, RD Corbett, ... BMC genomics 14, 1-19, 2013 | 18 | 2013 |
| Topological signatures for population admixture L Parida, F Utro, D Yorukoglu, AP Carrieri, D Kuhn, S Basu Research in Computational Molecular Biology: 19th Annual International …, 2015 | 11 | 2015 |
| Research in computational molecular biology B Berger, D Yorukoglu, B Berger Lecture Notes in Computer Science 6044, 2010 | 8 | 2010 |
| Haptree-x: An integrative bayesian framework for haplotype reconstruction from transcriptome and genome sequencing data E Berger, D Yorukoglu, B Berger Research in Computational Molecular Biology: 19th Annual International …, 2015 | 7 | 2015 |
| Compressively-accelerated read mapping BB Leighton, D Yörükoglu US Patent App. 14/053,387, 2014 | 5 | 2014 |
| Compressively-accelerated read mapping framework for next-generation sequencing BB Leighton, D Yorukoglu, J Peng US Patent 10,230,390, 2019 | 4 | 2019 |
| Next-generation VariationHunter: combinatorial algorithms for transposon insertion discovery. Bioinformatics 26: i350–i357 F Hormozdiari, I Hajirasouliha, P Dao, F Hach, D Yorukoglu, C Alkan, ... | 3 | 2010 |
| Discovery of biomarkers for hexachlorobenzene toxicity using population based methods on gene expression data C Meydan, A Küçükural, D Yörükoğlu, OU Sezerman Pattern Recognition in Bioinformatics: Third IAPR International Conference …, 2008 | 3 | 2008 |
| Quality score compression apparatus and method for improving downstream accuracy BB Leighton, D Yorukoglu, YW Yu, J Peng US Patent 11,762,813, 2023 | 1 | 2023 |
| Quality score compression for improving downstream genotyping accuracy BB Leighton, D Yorukoglu, YW Yu, J Peng US Patent App. 18/370,299, 2024 | | 2024 |
| Compressively-accelerated read mapping framework for next-generation sequencing BB Leighton, D Yorukoglu, J Peng US Patent 11,632,125, 2023 | | 2023 |
Faraz HachAssistant Professor at University of British ColumbiaVerified email at ubc.ca
