| Genome-wide identification of in vivo protein–DNA binding sites from ChIP-Seq data R Jothi, S Cuddapah, A Barski, K Cui, K Zhao Nucleic acids research 36 (16), 5221, 2008 | 646 | 2008 |
| Global analysis of the insulator binding protein CTCF in chromatin barrier regions reveals demarcation of active and repressive domains S Cuddapah, R Jothi, DE Schones, TY Roh, K Cui, K Zhao Genome research 19 (1), 24-32, 2009 | 632 | 2009 |
| An embryonic stem cell chromatin remodeling complex, esBAF, is an essential component of the core pluripotency transcriptional network L Ho, R Jothi, JL Ronan, K Cui, K Zhao, GR Crabtree Proceedings of the National Academy of Sciences 106 (13), 5187-5191, 2009 | 405 | 2009 |
| Genome-wide analyses of transcription factor GATA3-mediated gene regulation in distinct T cell types G Wei, BJ Abraham, R Yagi, R Jothi, K Cui, S Sharma, L Narlikar, ... Immunity 35 (2), 299-311, 2011 | 266 | 2011 |
| esBAF facilitates pluripotency by conditioning the genome for LIF/STAT3 signalling and by regulating polycomb function L Ho, EL Miller, JL Ronan, WQ Ho, R Jothi, GR Crabtree Nature cell biology 13 (8), 903-913, 2011 | 226 | 2011 |
| Global phosphoproteomic analysis of human skeletal muscle reveals a network of exercise-regulated kinases and AMPK substrates NJ Hoffman, BL Parker, R Chaudhuri, KH Fisher-Wellman, M Kleinert, ... Cell metabolism 22 (5), 922-935, 2015 | 206 | 2015 |
| Interplay between gene expression noise and regulatory network architecture G Chalancon, CNJ Ravarani, S Balaji, A Martinez-Arias, L Aravind, ... Trends in genetics 28 (5), 221-232, 2012 | 201 | 2012 |
| DOMINE: a comprehensive collection of known and predicted domain-domain interactions S Yellaboina, A Tasneem, DV Zaykin, B Raghavachari, R Jothi Nucleic acids research 39 (suppl_1), D730-D735, 2011 | 179 | 2011 |
| Chromatin poises miRNA-and protein-coding genes for expression A Barski, R Jothi, S Cuddapah, K Cui, TY Roh, DE Schones, K Zhao Genome research 19 (10), 1742-1751, 2009 | 157 | 2009 |
| DOMINE: a database of protein domain interactions B Raghavachari, A Tasneem, TM Przytycka, R Jothi Nucleic acids research 36 (suppl_1), D656-D661, 2008 | 154 | 2008 |
| Genomic analysis reveals a tight link between transcription factor dynamics and regulatory network architecture R Jothi, S Balaji, A Wuster, JA Grochow, J Gsponer, TM Przytycka, ... Molecular systems biology 5 (1), 294, 2009 | 152 | 2009 |
| Co-evolutionary analysis of domains in interacting proteins reveals insights into domain–domain interactions mediating protein–protein interactions R Jothi, PF Cherukuri, A Tasneem, TM Przytycka Journal of molecular biology 362 (4), 861-875, 2006 | 151 | 2006 |
| DNMT1 is essential for mammary and cancer stem cell maintenance and tumorigenesis R Pathania, S Ramachandran, S Elangovan, R Padia, P Yang, S Cinghu, ... Nature communications 6 (1), 1-11, 2015 | 140 | 2015 |
| INO80 facilitates pluripotency gene activation in embryonic stem cell self-renewal, reprogramming, and blastocyst development L Wang, Y Du, JM Ward, T Shimbo, B Lackford, X Zheng, Y Miao, B Zhou, ... Cell stem cell 14 (5), 575-591, 2014 | 120 | 2014 |
| Diverse stresses dramatically alter genome-wide p53 binding and transactivation landscape in human cancer cells D Menendez, TA Nguyen, JM Freudenberg, VJ Mathew, CW Anderson, ... Nucleic acids research 41 (15), 7286-7301, 2013 | 118 | 2013 |
| Predicting domain-domain interactions using a parsimony approach KS Guimarães, R Jothi, E Zotenko, TM Przytycka Genome biology 7 (11), R104, 2006 | 111 | 2006 |
| Fip1 regulates mRNA alternative polyadenylation to promote stem cell self‐renewal B Lackford, C Yao, GM Charles, L Weng, X Zheng, EA Choi, X Xie, J Wan, ... The EMBO journal 33 (8), 878-889, 2014 | 110 | 2014 |
| Nuclear adaptor Ldb1 regulates a transcriptional program essential for the maintenance of hematopoietic stem cells LQ Li, R Jothi, K Cui, JY Lee, T Cohen, M Gorivodsky, I Tzchori, Y Zhao, ... Nature immunology 12 (2), 129, 2011 | 109 | 2011 |
| Histone-fold domain protein NF-Y promotes chromatin accessibility for cell type-specific master transcription factors AJ Oldfield, P Yang, AE Conway, S Cinghu, JM Freudenberg, ... Molecular cell 55 (5), 708-722, 2014 | 104 | 2014 |
| Acute depletion of Tet1-dependent 5-hydroxymethylcytosine levels impairs LIF/Stat3 signaling and results in loss of embryonic stem cell identity JM Freudenberg, S Ghosh, BL Lackford, S Yellaboina, X Zheng, R Li, ... Nucleic acids research 40 (8), 3364-3377, 2012 | 99 | 2012 |
kairong cuiNHLBI, NIHVerified email at nhlbi.nih.gov
