|A comprehensive assessment of RNA-seq accuracy, reproducibility and information content by the Sequencing Quality Control Consortium|
Z Su, PP Łabaj, S Li, J Thierry-Mieg, D Thierry-Mieg, W Shi, C Wang, ...
Nature biotechnology 32 (9), 903-914, 2014
|The concordance between RNA-seq and microarray data depends on chemical treatment and transcript abundance|
C Wang, B Gong, PR Bushel, J Thierry-Mieg, D Thierry-Mieg, J Xu, ...
Nature biotechnology 32 (9), 926-932, 2014
|SubpathwayMiner: a software package for flexible identification of pathways|
C Li, X Li, Y Miao, Q Wang, W Jiang, C Xu, J Li, J Han, F Zhang, B Gong, ...
Nucleic acids research 37 (19), e131-e131, 2009
|Gene mining: a novel and powerful ensemble decision approach to hunting for disease genes using microarray expression profiling|
X Li, S Rao, Y Wang, B Gong
Nucleic Acids Research 32 (9), 2685-2694, 2004
|An investigation of biomarkers derived from legacy microarray data for their utility in the RNA-seq era|
Z Su, H Fang, H Hong, L Shi, W Zhang, W Zhang, Y Zhang, Z Dong, ...
Genome biology 15 (12), 1-25, 2014
|DOSim: an R package for similarity between diseases based on disease ontology|
J Li, B Gong, X Chen, T Liu, C Wu, F Zhang, C Li, X Li, S Rao, X Li
BMC bioinformatics 12 (1), 266, 2011
|Combined gene expression and protein interaction analysis of dynamic modularity in glioma prognosis|
X Zhang, H Yang, B Gong, C Jiang, L Yang
Journal of neuro-oncology 107 (2), 281-288, 2012
|Comprehensive assessments of RNA-seq by the SEQC consortium: FDA-led efforts advance precision medicine|
J Xu, B Gong, L Wu, S Thakkar, H Hong, W Tong
Pharmaceutics 8 (1), 8, 2016
|Transcriptomic profiling of rat liver samples in a comprehensive study design by RNA-Seq|
B Gong, C Wang, Z Su, H Hong, J Thierry-Mieg, D Thierry-Mieg, L Shi, ...
Scientific data 1 (1), 1-10, 2014
|From phenotype to gene: detecting disease-specific gene functional modules via a text-based human disease phenotype network construction|
SH Zhang, C Wu, X Li, X Chen, W Jiang, BS Gong, J Li, YQ Yan
FEBS letters 584 (16), 3635-3643, 2010
|A systematic method for mapping multiple loci: an application to construct a genetic network for rheumatoid arthritis|
C Li, G Zhang, X Li, S Rao, B Gong, W Jiang, D Hao, P Wu, C Wu, L Du, ...
Gene 408 (1-2), 104-111, 2008
|A robust approach based on Weibull distribution for clustering gene expression data|
H Wang, Z Wang, X Li, B Gong, L Feng, Y Zhou
Algorithms for Molecular Biology 6 (1), 1-9, 2011
|The FDA’s Experience with Emerging Genomics Technologies—Past, Present, and Future|
J Xu, S Thakkar, B Gong, W Tong
The AAPS journal 18 (4), 814-818, 2016
|Correlation between genetic polymorphism of cytokine genes, plasma protein levels and bronchial asthma in the Han people in northern China|
L Xiaomin, C Fenglin, H Jianmin, S Yuzhi, G Binsheng, Z Yingmei
Journal of Asthma 45 (7), 583-589, 2008
|Discovering functional modules by topic modeling RNA-seq based toxicogenomic data|
K Yu, B Gong, M Lee, Z Liu, J Xu, R Perkins, W Tong
Chemical research in toxicology 27 (9), 1528-1536, 2014
|Disease-driven detection of differential inherited SNP modules from SNP network|
C Li, Y Li, J Xu, J Lv, Y Ma, T Shao, B Gong, R Tan, Y Xiao, X Li
Gene 489 (2), 119-129, 2011
|Functional homogeneity in microRNA target heterogeneity—a new sight into human microRNomics|
Y Wang, L Du, X Li, S Zhang, Y Xiao, B Gong, Q Wang, M Zhou, C Xu, ...
Omics: a journal of integrative biology 15 (1-2), 25-35, 2011
|Multivariate sib-pair linkage analysis of longitudinal phenotypes by three step-wise analysis approaches|
Z Guo, X Li, S Rao, KL Moser, T Zhang, B Gong, G Shen, L Li, R Cannata, ...
BMC genetics 4 (1), 1-7, 2003
|Evaluation of bioinformatics approaches for next-generation sequencing analysis of microRNAs with a toxicogenomics study design|
H Bisgin, B Gong, Y Wang, W Tong
Frontiers in genetics 9, 22, 2018
|Mechanistic roles of microRNAs in hepatocarcinogenesis: a study of thioacetamide with multiple doses and time-points of rats|
H Dweep, Y Morikawa, B Gong, J Yan, Z Liu, T Chen, H Bisgin, W Zou, ...
Scientific reports 7 (1), 1-12, 2017