Folgen
Miki Nakano
Miki Nakano
Bestätigte E-Mail-Adresse bei riken.go.jp - Startseite
Titel
Zitiert von
Zitiert von
Jahr
Choline ion interactions with DNA atoms explain unique stabilization of A–T base pairs in DNA duplexes: a microscopic view
M Nakano, H Tateishi-Karimata, S Tanaka, N Sugimoto
The Journal of Physical Chemistry B 118 (2), 379-389, 2014
612014
Molecular dynamics simulation study on the structural stabilities of polyglutamine peptides
H Ogawa, M Nakano, H Watanabe, EB Starikov, SM Rothstein, S Tanaka
Computational biology and chemistry 32 (2), 102-110, 2008
422008
Comparable Stability of Hoogsteen and Watson–Crick Base Pairs in Ionic Liquid Choline Dihydrogen Phosphate
H Tateishi-Karimata, M Nakano, N Sugimoto
Scientific reports 4 (1), 1-7, 2014
342014
Thermodynamic properties of water molecules in the presence of cosolute depend on DNA structure: a study using grid inhomogeneous solvation theory
M Nakano, H Tateishi-Karimata, S Tanaka, F Tama, O Miyashita, ...
Nucleic acids research 43 (21), 10114-10125, 2015
292015
Comparative characterization of short monomeric polyglutamine peptides by replica exchange molecular dynamics simulation
M Nakano, H Watanabe, SM Rothstein, S Tanaka
The journal of physical chemistry B 114 (20), 7056-7061, 2010
292010
i-Motifs are more stable than G-quadruplexes in a hydrated ionic liquid
H Tateishi-Karimata, M Nakano, S Pramanik, S Tanaka, N Sugimoto
Chemical Communications 51 (32), 6909-6912, 2015
222015
Affinity of molecular ions for DNA structures is determined by solvent-accessible surface area
M Nakano, H Tateishi-Karimata, S Tanaka, N Sugimoto
The Journal of Physical Chemistry B 118 (32), 9583-9594, 2014
152014
Study of the aggregation mechanism of polyglutamine peptides using replica exchange molecular dynamics simulations
M Nakano, K Ebina, S Tanaka
Journal of molecular modeling 19 (4), 1627-1639, 2013
152013
Local thermodynamics of the water molecules around single-and double-stranded DNA studied by grid inhomogeneous solvation theory
M Nakano, H Tateishi-Karimata, S Tanaka, F Tama, O Miyashita, ...
Chemical Physics Letters 660, 250-255, 2016
142016
Single-particle XFEL 3D reconstruction of ribosome-size particles based on Fourier slice matching: Requirements to reach subnanometer resolution
M Nakano, O Miyashita, S Jonic, A Tokuhisa, F Tama
Journal of Synchrotron Radiation 25 (4), 1010-1021, 2018
132018
Three-dimensional reconstruction for coherent diffraction patterns obtained by XFEL
M Nakano, O Miyashita, S Jonic, C Song, D Nam, Y Joti, F Tama
Journal of Synchrotron Radiation 24 (4), 727-737, 2017
82017
Molecular mechanics and all-electron fragment molecular orbital calculations on mutated polyglutamine peptides
BMB Van Schouwen, M Nakano, H Watanabe, S Tanaka, HL Gordon, ...
Journal of Molecular Structure: THEOCHEM 944 (1-3), 12-20, 2010
82010
Mutation effects on structural stability of polyglutamine peptides by molecular dynamics simulation
M Nakano, H Watanabe, EB Starikov, SM Rothstein, S Tanaka
Interdisciplinary Sciences: Computational Life Sciences 1 (1), 21-29, 2009
82009
Classical density functional calculation of radial distribution functions of liquid water
S Tanaka, M Nakano
Chemical Physics 430, 18-22, 2014
42014
Triplet correlations and bridge functions in classical density functional theory for liquid water
S Tanaka, M Nakano
Chemical Physics Letters 572, 38-43, 2013
32013
Parameter optimization for 3D-reconstruction from XFEL diffraction patterns based on Fourier slice matching
M Nakano, O Miyashita, F Tama
Biophysics and physicobiology 16, 367-376, 2019
2019
Effects of bridge functions on radial distribution functions of liquid water
S Tanaka, M Nakano
Interdisciplinary Sciences: Computational Life Sciences 7 (2), 152-156, 2015
2015
Choline Ions Stabilize A–T Base Pairs by Fitting into Minor Groove
M Nakano, H Tateishi-Karimata, S Tanaka, N Sugimoto
Proceedings of Computational Science Workshop 2014 (CSW2014), 011008, 2015
2015
3P119 Analysis for the effect of choline ions on the stability of DNA base pairs using molecular dynamics simulation (05A. Nucleic acid: Structure & Property, Poster)
M Nakano, H Tateishi-Karimata, N Sugimoto
Seibutsu Butsuri 53 (supplement1-2), S231, 2013
2013
3P119 DNA 塩基対の安定性に及ぼすコリンイオンの効果の分子動力学計算による解析 (05A. 核酸: 構造・物性, ポスター, 日本生物物理学会年会第 51 回 (2013 年度))
M Nakano, TK Hisae, N Sugimoto
生物物理 53 (1), S231, 2013
2013
Das System kann den Vorgang jetzt nicht ausführen. Versuchen Sie es später erneut.
Artikel 1–20