François Bertaux
François Bertaux
Lesaffre International
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Maximum-likelihood inference of population size contractions from microsatellite data
R Leblois, P Pudlo, J Néron, F Bertaux, C Reddy Beeravolu, R Vitalis, ...
Molecular biology and evolution 31 (10), 2805-2823, 2014
Modeling dynamics of cell-to-cell variability in TRAIL-induced apoptosis explains fractional killing and predicts reversible resistance
F Bertaux, S Stoma, D Drasdo, G Batt
PLoS computational biology 10 (10), e1003893, 2014
bayNorm: Bayesian gene expression recovery, imputation and normalisation for single cell RNA-sequencing data
WT Tang, F Bertaux, P Thomas, C Stefanelli, M Saint, S Marguerat, ...
Bioinformatics, 2019
Size-dependent increase in RNA Polymerase II initiation rates mediates gene expression scaling with cell size
XM Sun, A Bowman, M Priestman, F Bertaux, A Martinez-Segura, W Tang, ...
Current Biology 30 (7), 1217-1230. e7, 2020
Division rate, cell size and proteome allocation: impact on gene expression noise and implications for the dynamics of genetic circuits
F Bertaux, S Marguerat, V Shahrezaei
Royal Society open science 5 (3), 172234, 2018
Single-cell imaging and RNA sequencing reveal patterns of gene expression heterogeneity during fission yeast growth and adaptation
M Sain, F Bertaux, W Tang, XM Sun, L Game, A Köferle, J Bähler, ...
Nature microbiology, 2019
STL-based analysis of TRAIL-induced apoptosis challenges the notion of type I/type II cell line classification
S Stoma, A Donzé, F Bertaux, O Maler, G Batt
PLoS computational biology 9 (5), e1003056, 2013
Model prediction and validation of an order mechanism controlling the spatiotemporal phenotype of early hepatocellular carcinoma
S Hoehme, F Bertaux, W Weens, B Grasl-Kraupp, JG Hengstler, D Drasdo
Bulletin of mathematical biology 80 (5), 1134-1171, 2018
A light tunable differentiation system for the creation and control of consortia in yeast
C Aditya, F Bertaux, G Batt, J Ruess
Nature communications 12 (1), 1-10, 2021
A bacterial size law revealed by a coarse-grained model of cell physiology
F Bertaux, J von Kügelgen, S Marguerat, V Shahrezaei
PLoS Computational Biology, 2020
Abstracting the Dynamics of Biological Pathways using Information Theory: A Case Study of Apoptosis Pathway
SK Palaniappan, F Bertaux, M Pichene, E Fabre, G Batt, B Genest
Bioinformatics, 2017
Enhancing bioreactor arrays for automated measurements and reactive control with ReacSight
F Bertaux, S Sosa-Carrillo, V Gross, A Fraisse, C Aditya, M Furstenheim, ...
Nature communications 13 (1), 1-12, 2022
Discrete Stochastic Abstraction of Biological Pathway Dynamics: A case study of the Apoptosis Pathway
S Palaniappan, F Bertaux, M Pichene, E Fabre, G Batt, B Genest
Bioinformatics 33 (13), 1980-1986, 2017
Growth-rate-dependent and nutrient-specific gene expression resource allocation in fission yeast
IT Kleijn, A Martínez-Segura, F Bertaux, M Saint, H Kramer, V Shahrezaei, ...
Life science alliance 5 (5), 2022
Using single-cell models to predict the functionality of synthetic circuits at the population scale
C Aditya, F Bertaux, G Batt, J Ruess
Proceedings of the National Academy of Sciences 119 (11), e2114438119, 2022
System modeling of receptor-induced apoptosis
F Bertaux, D Drasdo, G Batt
TRAIL, Fas Ligand, TNF and TLR3 in Cancer, 291-307, 2017
External control of microbial populations for bioproduction: A modeling and optimization viewpoint
F Bertaux, J Ruess, G Batt
Current Opinion in Systems Biology 28, 100394, 2021
Enabling reactive microscopy with MicroMator
ZR Fox, S Fletcher, A Fraisse, C Aditya, S Sosa-Carrillo, J Petit, S Gilles, ...
Nature communications 13 (1), 1-8, 2022
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