Krister M. Swenson
Krister M. Swenson
CNRS, Université Montpellier, LIRMM, Institut de Biologie Computationnelle
Verified email at lirmm.fr - Homepage
Title
Cited by
Cited by
Year
Approximating the true evolutionary distance between two genomes
KM Swenson, M Marron, JV Earnest-DeYoung, BME Moret
Journal of Experimental Algorithmics (JEA) 12, 1-17, 2008
982008
Genomic distances under deletions and insertions
M Marron, KM Swenson, BME Moret
Theoretical Computer Science 325 (3), 347-360, 2004
672004
An optimal reconciliation algorithm for gene trees with polytomies
M Lafond, KM Swenson, N El-Mabrouk
International Workshop on Algorithms in Bioinformatics, 106-122, 2012
472012
Uncovering hidden phylogenetic consensus in large data sets
N Pattengale, A Aberer, K Swenson, A Stamatakis, B Moret
IEEE/ACM transactions on computational biology and bioinformatics 8 (4), 902-911, 2011
412011
Genomic distances under deletions and insertions
M Marron, KM Swenson, BME Moret
International Computing and Combinatorics Conference, 537-547, 2003
392003
OMG! Orthologs in multiple genomes–competing graph-theoretical formulations
C Zheng, K Swenson, E Lyons, D Sankoff
International Workshop on Algorithms in Bioinformatics, 364-375, 2011
312011
Ancestral Genome Organization: An Alignment Approach
P Holloway, K Swenson, D Ardell, N El-Mabrouk
Journal of Computational Biology 20 (4), 280-295, 2013
30*2013
Heuristics for the inversion median problem
V Rajan, AW Xu, Y Lin, KM Swenson, BME Moret
BMC bioinformatics 11 (1), S30, 2010
282010
Hurdles hardly have to be heeded
KM Swenson, Y Lin, V Rajan, BME Moret
RECOMB International Workshop on Comparative Genomics, 241-251, 2008
252008
Gene tree correction guided by orthology
M Lafond, M Semeria, KM Swenson, E Tannier, N El-Mabrouk
BMC bioinformatics 14 (S15), S5, 2013
242013
Estimating true evolutionary distances under rearrangements, duplications, and losses
Y Lin, V Rajan, KM Swenson, BME Moret
BMC bioinformatics 11 (S1), S54, 2010
242010
Gene trees and species trees: irreconcilable differences
KM Swenson, N El-Mabrouk
BMC bioinformatics 13 (19), S15, 2012
222012
A framework for orthology assignment from gene rearrangement data
KM Swenson, ND Pattengale, BME Moret
RECOMB Workshop on Comparative Genomics, 153-166, 2005
202005
Gene tree correction for reconciliation and species tree inference
KM Swenson, A Doroftei, N El-Mabrouk
Algorithms for Molecular Biology 7 (1), 31, 2012
192012
Uncovering hidden phylogenetic consensus
ND Pattengale, KM Swenson, BME Moret
International Symposium on Bioinformatics Research and Applications, 128-139, 2010
192010
Phylogenetic reconstruction from complete gene orders of whole genomes
KM Swenson, W Arndt, J Tang, BME Moret
Proceedings of the 6th Asia Pacific Bioinformatics Conference (APBC’08 6 …, 2008
182008
Sorting signed permutations by inversions in O (n log n) time
KM Swenson, V Rajan, Y Lin, BME Moret
Journal of Computational Biology 17 (3), 489-501, 2010
172010
Gene tree correction for reconciliation and species tree inference: complexity and algorithms
R Dondi, N El-Mabrouk, KM Swenson
Journal of Discrete Algorithms 25, 51-65, 2014
152014
The Metropolized Partial Importance Sampling MCMC mixes slowly on minimum reversal rearrangement paths
I Miklós, B Mélykúti, K Swenson
IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB) 7 …, 2010
152010
Models and algorithms for genome rearrangement with positional constraints
KM Swenson, P Simonaitis, M Blanchette
Algorithms for Molecular Biology 11 (1), 13, 2016
142016
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