Pierre Peterlongo
Pierre Peterlongo
Verified email at inria.fr - Homepage
Cited by
Cited by
Critical assessment of metagenome interpretation—a benchmark of metagenomics software
A Sczyrba, P Hofmann, P Belmann, D Koslicki, S Janssen, J Dröge, ...
Nature methods 14 (11), 1063-1071, 2017
Computational pan-genomics: status, promises and challenges
Briefings in bioinformatics 19 (1), 118-135, 2018
K is s plice: de-novo calling alternative splicing events from rna-seq data
GAT Sacomoto, J Kielbassa, R Chikhi, R Uricaru, P Antoniou, MF Sagot, ...
BMC bioinformatics 13 (6), 1-12, 2012
Reference-free detection of isolated SNPs
R Uricaru, G Rizk, V Lacroix, E Quillery, O Plantard, R Chikhi, C Lemaitre, ...
Nucleic acids research 43 (2), e11-e11, 2015
Multiple comparative metagenomics using multiset k-mer counting
G Benoit, P Peterlongo, M Mariadassou, E Drezen, S Schbath, D Lavenier, ...
PeerJ Computer Science 2, e94, 2016
GATB: genome assembly & analysis tool box
E Drezen, G Rizk, R Chikhi, C Deltel, C Lemaitre, P Peterlongo, ...
Bioinformatics 30 (20), 2959-2961, 2014
SNP discovery and genetic mapping using genotyping by sequencing of whole genome genomic DNA from a pea RIL population
G Boutet, SA Carvalho, M Falque, P Peterlongo, E Lhuillier, O Bouchez, ...
BMC genomics 17 (1), 1-14, 2016
Read mapping on de Bruijn graphs
A Limasset, B Cazaux, E Rivals, P Peterlongo
BMC bioinformatics 17 (1), 1-12, 2016
Compareads: comparing huge metagenomic experiments
N Maillet, C Lemaitre, R Chikhi, D Lavenier, P Peterlongo
BMC bioinformatics 13 (19), 1-10, 2012
Fast and scalable minimal perfect hashing for massive key sets
A Limasset, G Rizk, R Chikhi, P Peterlongo
arXiv preprint arXiv:1702.03154, 2017
COMMET: comparing and combining multiple metagenomic datasets
N Maillet, G Collet, T Vannier, D Lavenier, P Peterlongo
2014 IEEE international conference on bioinformatics and biomedicine (BIBM …, 2014
Identifying SNPs without a reference genome by comparing raw reads
P Peterlongo, N Schnel, N Pisanti, MF Sagot, V Lacroix
International symposium on string processing and information retrieval, 147-158, 2010
Mapsembler, targeted and micro assembly of large NGS datasets on a desktop computer
P Peterlongo, R Chikhi
BMC bioinformatics 13 (1), 1-14, 2012
A first approach to finding common motifs with gaps
CS Iliopoulos, J McHugh, P Peterlongo, N Pisanti, W Rytter, MF Sagot
International Journal of Foundations of Computer Science 16 (06), 1145-1154, 2005
Mutations and genomic islands can explain the strain dependency of sugar utilization in 21 strains of Propionibacterium freudenreichii
V Loux, M Mariadassou, S Almeida, H Chiapello, A Hammani, J Buratti, ...
BMC genomics 16 (1), 1-19, 2015
Lossless filter for multiple repeats with bounded edit distance
P Peterlongo, GAT Sacomoto, AP do Lago, N Pisanti, MF Sagot
Algorithms for Molecular Biology 4 (1), 1-20, 2009
Lossless filter for multiple repetitions with Hamming distance
P Peterlongo, N Pisanti, F Boyer, AP Do Lago, MF Sagot
Journal of Discrete Algorithms 6 (3), 497-509, 2008
DiscoSnp++: de novo detection of small variants from raw unassembled read set (s)
P Peterlongo, C Riou, E Drezen, C Lemaitre
BioRxiv, 209965, 2017
Finding common motifs with gaps using finite automata
P Antoniou, J Holub, CS Iliopoulos, B Melichar, P Peterlongo
International Conference on Implementation and Application of Automata, 69-77, 2006
Protein similarity search with subset seeds on a dedicated reconfigurable hardware
P Peterlongo, L Noé, D Lavenier, G Georges, J Jacques, G Kucherov, ...
International Conference on Parallel Processing and Applied Mathematics …, 2007
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