|Self-destructive cooperation mediated by phenotypic noise|
M Ackermann, B Stecher, NE Freed, P Songhet, WD Hardt, M Doebeli
Nature 454 (7207), 987-990, 2008
|Rapid identification and strain-typing of respiratory pathogens for epidemic surveillance|
DJ Ecker, R Sampath, LB Blyn, MW Eshoo, C Ivy, JA Ecker, B Libby, ...
Proceedings of the National Academy of Sciences 102 (22), 8012-8017, 2005
|Transmission dynamics and prospective environmental sampling of adenovirus in a military recruit setting|
KL Russell, MP Broderick, SE Franklin, LB Blyn, NE Freed, E Moradi, ...
The journal of infectious diseases 194 (7), 877-885, 2006
|A simple screen to identify promoters conferring high levels of phenotypic noise|
NE Freed, OK Silander, B Stecher, A Böhm, WD Hardt, M Ackermann
PLoS Genet 4 (12), e1000307, 2008
|Rapid detection and molecular serotyping of adenovirus by use of PCR followed by electrospray ionization mass spectrometry|
LB Blyn, TA Hall, B Libby, R Ranken, R Sampath, K Rudnick, E Moradi, ...
Journal of clinical microbiology 46 (2), 644-651, 2008
|Molecular analysis of adenovirus isolates from vaccinated and unvaccinated young adults|
DA Blasiole, D Metzgar, LT Daum, MAK Ryan, J Wu, C Wills, CT Le, ...
Journal of clinical microbiology 42 (4), 1686-1693, 2004
|Co-infections of adenovirus species in previously vaccinated patients|
GJ Vora, B Lin, K Gratwick, C Meador, C Hansen, C Tibbetts, DA Stenger, ...
Emerging infectious diseases 12 (6), 921, 2006
|Effectiveness of the 2003–2004 influenza vaccine among US military basic trainees: a year of suboptimal match between vaccine and circulating strain|
KL Russell, MAK Ryan, A Hawksworth, NE Freed, M Irvine, LT Daum, ...
Vaccine 23 (16), 1981-1985, 2005
|Combining Shigella Tn-seq data with gold-standard E. coli gene deletion data suggests rare transitions between essential and non-essential gene functionality|
NE Freed, D Bumann, OK Silander
BMC Microbiology 16 (203), 1-14, 2016
|Diagnostic discrimination of live attenuated influenza vaccine strains and community-acquired pathogenic strains in clinical samples|
NE Freed, CA Myers, KL Russell, EA Walter, M Irvine, RG Coon, ...
Molecular and cellular probes 21 (2), 103-110, 2007
|Rapid and inexpensive whole-genome sequencing of SARS-CoV-2 using 1200 bp tiled amplicons and Oxford Nanopore Rapid Barcoding|
NE Freed, M Vlková, MB Faisal, OK Silander
Biology Methods and Protocols 5 (1), bpaa014, 2020
|The advantages and disadvantages of short-and long-read metagenomics to infer bacterial and eukaryotic community composition|
WS Pearman, NE Freed, OK Silander
BioRxiv, 650788, 2019
|Surveillance for febrile respiratory infections during Cobra Gold 2003|
J Fuller, K Hanley, R Schultz, M Lewis, NE Freed, M Ellis, V Ngauy, ...
Military medicine 171 (5), 357-359, 2006
|New tools for diet analysis: nanopore sequencing of metagenomic DNA from rat stomach contents to quantify diet|
WS Pearman, ANH Smith, G Breckell, J Dale, NE Freed, OK Silander
BioRxiv, 363622, 2018
|Complete Genome Sequences of Cluster A Mycobacteriophages BobSwaget, Fred313, KADY, Lokk, MyraDee, Stagni, and StepMih|
KA Butela, SMR Gurney, HL Hendrickson, JM LeBlanc-Straceski, ...
Genome announcements 5 (43), 2017
|Creation of a dense transposon insertion library using bacterial conjugation in enterobacterial strains such as Escherichia coli or Shigella flexneri|
Journal of visualized experiments: JoVE, 2017
|Testing the advantages and disadvantages of short-and long-read eukaryotic metagenomics using simulated reads|
WS Pearman, NE Freed, OK Silander
BMC bioinformatics 21, 1-15, 2020
|The power and limitations of genomics to track COVID-19 outbreaks: a case study from New Zealand|
JL Geoghegan, J Douglas, X Ren, M Storey, J Hadfield, OK Silander, ...
|Concordant geographic and genetic structure revealed by genotyping‐by‐sequencing in a New Zealand marine isopod|
WS Pearman, SJ Wells, OK Silander, NE Freed, J Dale
Ecology and Evolution, 2020
|Population genomics of a New Zealand endemic marine isopod|
S Wells, SJ Pearman, OK Silander, NE Freed, J Dale