Self-destructive cooperation mediated by phenotypic noise M Ackermann, B Stecher, NE Freed, P Songhet, WD Hardt, M Doebeli Nature 454 (7207), 987-990, 2008 | 371 | 2008 |
Rapid identification and strain-typing of respiratory pathogens for epidemic surveillance DJ Ecker, R Sampath, LB Blyn, MW Eshoo, C Ivy, JA Ecker, B Libby, ... Proceedings of the National Academy of Sciences 102 (22), 8012-8017, 2005 | 267 | 2005 |
Transmission dynamics and prospective environmental sampling of adenovirus in a military recruit setting KL Russell, MP Broderick, SE Franklin, LB Blyn, NE Freed, E Moradi, ... The journal of infectious diseases 194 (7), 877-885, 2006 | 183 | 2006 |
A simple screen to identify promoters conferring high levels of phenotypic noise NE Freed, OK Silander, B Stecher, A Böhm, WD Hardt, M Ackermann PLoS Genet 4 (12), e1000307, 2008 | 81 | 2008 |
Rapid detection and molecular serotyping of adenovirus by use of PCR followed by electrospray ionization mass spectrometry LB Blyn, TA Hall, B Libby, R Ranken, R Sampath, K Rudnick, E Moradi, ... Journal of clinical microbiology 46 (2), 644-651, 2008 | 65 | 2008 |
Molecular analysis of adenovirus isolates from vaccinated and unvaccinated young adults DA Blasiole, D Metzgar, LT Daum, MAK Ryan, J Wu, C Wills, CT Le, ... Journal of clinical microbiology 42 (4), 1686-1693, 2004 | 59 | 2004 |
Co-infections of adenovirus species in previously vaccinated patients GJ Vora, B Lin, K Gratwick, C Meador, C Hansen, C Tibbetts, DA Stenger, ... Emerging infectious diseases 12 (6), 921, 2006 | 44 | 2006 |
Effectiveness of the 2003–2004 influenza vaccine among US military basic trainees: a year of suboptimal match between vaccine and circulating strain KL Russell, MAK Ryan, A Hawksworth, NE Freed, M Irvine, LT Daum, ... Vaccine 23 (16), 1981-1985, 2005 | 31 | 2005 |
Combining Shigella Tn-seq data with gold-standard E. coli gene deletion data suggests rare transitions between essential and non-essential gene functionality NE Freed, D Bumann, OK Silander BMC Microbiology 16 (203), 1-14, 2016 | 16 | 2016 |
Diagnostic discrimination of live attenuated influenza vaccine strains and community-acquired pathogenic strains in clinical samples NE Freed, CA Myers, KL Russell, EA Walter, M Irvine, RG Coon, ... Molecular and cellular probes 21 (2), 103-110, 2007 | 11 | 2007 |
Rapid and inexpensive whole-genome sequencing of SARS-CoV-2 using 1200 bp tiled amplicons and Oxford Nanopore Rapid Barcoding NE Freed, M Vlková, MB Faisal, OK Silander Biology Methods and Protocols 5 (1), bpaa014, 2020 | 7 | 2020 |
The advantages and disadvantages of short-and long-read metagenomics to infer bacterial and eukaryotic community composition WS Pearman, NE Freed, OK Silander BioRxiv, 650788, 2019 | 4 | 2019 |
Surveillance for febrile respiratory infections during Cobra Gold 2003 J Fuller, K Hanley, R Schultz, M Lewis, NE Freed, M Ellis, V Ngauy, ... Military medicine 171 (5), 357-359, 2006 | 4 | 2006 |
New tools for diet analysis: nanopore sequencing of metagenomic DNA from rat stomach contents to quantify diet WS Pearman, ANH Smith, G Breckell, J Dale, NE Freed, OK Silander BioRxiv, 363622, 2018 | 3 | 2018 |
Complete Genome Sequences of Cluster A Mycobacteriophages BobSwaget, Fred313, KADY, Lokk, MyraDee, Stagni, and StepMih KA Butela, SMR Gurney, HL Hendrickson, JM LeBlanc-Straceski, ... Genome announcements 5 (43), 2017 | 3 | 2017 |
Creation of a dense transposon insertion library using bacterial conjugation in enterobacterial strains such as Escherichia coli or Shigella flexneri NE Freed Journal of visualized experiments: JoVE, 2017 | 3 | 2017 |
Testing the advantages and disadvantages of short-and long-read eukaryotic metagenomics using simulated reads WS Pearman, NE Freed, OK Silander BMC bioinformatics 21, 1-15, 2020 | 2 | 2020 |
The power and limitations of genomics to track COVID-19 outbreaks: a case study from New Zealand JL Geoghegan, J Douglas, X Ren, M Storey, J Hadfield, OK Silander, ... medRxiv, 2020 | 1 | 2020 |
Concordant geographic and genetic structure revealed by genotyping‐by‐sequencing in a New Zealand marine isopod WS Pearman, SJ Wells, OK Silander, NE Freed, J Dale Ecology and Evolution, 2020 | | 2020 |
Population genomics of a New Zealand endemic marine isopod S Wells, SJ Pearman, OK Silander, NE Freed, J Dale | | 2020 |