| The Nucleic Acid Database: new features and capabilities B Coimbatore Narayanan, J Westbrook, S Ghosh, AI Petrov, B Sweeney, ... Nucleic acids research 42 (D1), D114-D122, 2014 | 234 | 2014 |
| RNAcentral 2021: secondary structure integration, improved sequence search and new member databases Nucleic acids research 49 (D1), D212-D220, 2021 | 170 | 2021 |
| Exploring the parameter space of complex self-assembly through virus capsid models B Sweeney, T Zhang, R Schwartz Biophysical journal 94 (3), 772-783, 2008 | 71 | 2008 |
| R2DT is a framework for predicting and visualising RNA secondary structure using templates BA Sweeney, D Hoksza, EP Nawrocki, CE Ribas, F Madeira, JJ Cannone, ... Nature Communications 12 (1), 3494, 2021 | 62 | 2021 |
| Identifying novel sequence variants of RNA 3D motifs CL Zirbel, J Roll, BA Sweeney, AI Petrov, M Pirrung, NB Leontis Nucleic acids research 43 (15), 7504-7520, 2015 | 51 | 2015 |
| The RNA 3D Motif Atlas: Computational methods for extraction, organization and evaluation of RNA motifs LG Parlea, BA Sweeney, M Hosseini-Asanjan, CL Zirbel, NB Leontis Methods 103, 99-119, 2016 | 40 | 2016 |
| An introduction to recurrent nucleotide interactions in RNA BA Sweeney, P Roy, NB Leontis Wiley Interdisciplinary Reviews: RNA 6 (1), 17-45, 2015 | 37 | 2015 |
| JAR3D Webserver: Scoring and aligning RNA loop sequences to known 3D motifs J Roll, CL Zirbel, B Sweeney, AI Petrov, N Leontis Nucleic acids research 44 (W1), W320-W327, 2016 | 28 | 2016 |
| When will RNA get its AlphaFold moment? B Schneider, BA Sweeney, A Bateman, J Cerny, T Zok, M Szachniuk Nucleic Acids Research 51 (18), 9522-9532, 2023 | 22 | 2023 |
| Conference Scene: Advances in RNA nanotechnology promise to transform medicine N Leontis, B Sweeney, F Haque, P Guo Nanomedicine 8 (7), 1051-1054, 2013 | 13 | 2013 |
| The spectrum of Trp− mutants isolated as 5‐fluoroanthranilate‐resistant clones in Saccharomyces bayanus, S. mikatae and S. paradoxus EW Jones, PB Berget, JM Burnette Iii, C Anderson, D Asafu‐Adjei, ... Yeast 25 (1), 41-46, 2008 | 13 | 2008 |
| Exploring Non‐Coding RNAs in RNAcentral BA Sweeney, AA Tagmazian, CE Ribas, RD Finn, A Bateman, AI Petrov Current Protocols in Bioinformatics 71 (1), e104, 2020 | 7 | 2020 |
| R3D-2-MSA: the RNA 3D structure-to-multiple sequence alignment server JJ Cannone, BA Sweeney, AI Petrov, RR Gutell, CL Zirbel, N Leontis Nucleic acids research 43 (W1), W15-W23, 2015 | 7 | 2015 |
| Context-sensitivity of isosteric substitutions of non-Watson–Crick basepairs in recurrent RNA 3D motifs EF Khisamutdinov, BA Sweeney, NB Leontis Nucleic acids research 49 (16), 9574-9593, 2021 | 6 | 2021 |
| R2DT: computational framework for template-based RNA secondary structure visualisation across non-coding RNA types BA Sweeney, D Hoksza, EP Nawrocki, CE Ribas, F Madeira, JJ Cannone, ... bioRxiv, 2020.09. 10.290924, 2020 | 4 | 2020 |
| Analyzing, searching, and annotating recurrent RNA three-dimensional motifs AI Petrov, BA Sweeney, NB Leontis RNA Structure and Folding: Biophysical Techniques and Prediction Methods …, 2013 | 3 | 2013 |
| Characterizing the parameter space of complex self-assembly reactions through quantitative discrete event simulations T Zhang, B Sweeney, H Kim, B Lee, R Schwartz BIOPHYSICAL JOURNAL, 533A-534A, 2007 | 1 | 2007 |
| LitSumm: Large language models for literature summarisation of non-coding RNAs A Green, C Ribas, N Ontiveros-Palacios, AI Petrov, A Bateman, ... arXiv preprint arXiv:2311.03056, 2023 | | 2023 |
| Comprehensive Survey of Conserved RNA Secondary Structures in Full-Genome Alignment of Hepatitis C Virus S Triebel, K Lamkiewicz, N Ontiveros, B Sweeney, PF Stadler, AI Petrov, ... bioRxiv, 2023.11. 15.567179, 2023 | | 2023 |
| RNAcentral: A Comprehensive Collection of Non-Coding RNA Sequences BA Sweeney Plant and Animal Genome XXVI Conference (January 13-17, 2018), 2018 | | 2018 |
