Son Pham
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SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing
A Bankevich, S Nurk, D Antipov, AA Gurevich, M Dvorkin, AS Kulikov, ...
Journal of computational biology 19 (5), 455-477, 2012
Differential responses to lithium in hyperexcitable neurons from patients with bipolar disorder
J Mertens, QW Wang, Y Kim, XY Diana, S Pham, B Yang, Y Zheng, ...
Nature 527 (7576), 95-99, 2015
Using single nuclei for RNA-seq to capture the transcriptome of postmortem neurons
SR Krishnaswami, RV Grindberg, M Novotny, P Venepally, B Lacar, ...
Nature protocols 11 (3), 499, 2016
Aloe vera for treating acute and chronic wounds
AD Dat, F Poon, KBT Pham, J Doust
Cochrane Database of Systematic Reviews, 2012
Haemagglutinin/protease expression and mucin gel penetration in El Tor biotype Vibrio cholerae
AJ Silva, K Pham, JA Benitez
Microbiology 149 (7), 1883-1891, 2003
Ragout—a reference-assisted assembly tool for bacterial genomes
M Kolmogorov, B Raney, B Paten, S Pham
Bioinformatics 30 (12), i302-i309, 2014
DNA vaccine coding for the full-length infectious Kunjin virus RNA protects mice against the New York strain of West Nile virus
RA Hall, DJ Nisbet, KB Pham, AT Pyke, GA Smith, AA Khromykh
Proceedings of the National Academy of Sciences 100 (18), 10460-10464, 2003
Paired de bruijn graphs: a novel approach for incorporating mate pair information into genome assemblers
P Medvedev, S Pham, M Chaisson, G Tesler, P Pevzner
Journal of Computational Biology 18 (11), 1625-1634, 2011
Sibelia: a scalable and comprehensive synteny block generation tool for closely related microbial genomes
I Minkin, A Patel, M Kolmogorov, N Vyahhi, S Pham
International Workshop on Algorithms in Bioinformatics, 215-229, 2013
ExSPAnder: a universal repeat resolver for DNA fragment assembly
AD Prjibelski, I Vasilinetc, A Bankevich, A Gurevich, T Krivosheeva, ...
Bioinformatics 30 (12), i293-i301, 2014
DRIMM-Synteny: decomposing genomes into evolutionary conserved segments
SK Pham, PA Pevzner
Bioinformatics 26 (20), 2509-2516, 2010
Sixteen diverse laboratory mouse reference genomes define strain-specific haplotypes and novel functional loci
J Lilue, AG Doran, IT Fiddes, M Abrudan, J Armstrong, R Bennett, ...
Nature genetics 50 (11), 1574-1583, 2018
Sediment transport and beach morphodynamics induced by free long waves, bound long waves and wave groups
TE Baldock, P Manoonvoravong, KS Pham
Coastal Engineering 57 (10), 898-916, 2010
TwoPaCo: An efficient algorithm to build the compacted de Bruijn graph from many complete genomes
I Minkin, S Pham, P Medvedev
Bioinformatics 33 (24), 4024-4032, 2017
Pagerank based clustering of hypertext document collections
K Avrachenkov, V Dobrynin, D Nemirovsky, SK Pham, E Smirnova
Proceedings of the 31st annual international ACM SIGIR conference on …, 2008
Cerulean: A hybrid assembly using high throughput short and long reads
V Deshpande, EDK Fung, S Pham, V Bafna
International workshop on algorithms in bioinformatics, 349-363, 2013
The Pharmacogenomics of Bipolar Disorder study (PGBD): identification of genes for lithium response in a prospective sample
KJ Oedegaard, M Alda, A Anand, OA Andreassen, Y Balaraman, ...
BMC psychiatry 16 (1), 1-15, 2016
Chromosome assembly of large and complex genomes using multiple references
M Kolmogorov, J Armstrong, BJ Raney, I Streeter, M Dunn, F Yang, ...
Genome research 28 (11), 1720-1732, 2018
Mitochondrial aging defects emerge in directly reprogrammed human neurons due to their metabolic profile
Y Kim, X Zheng, Z Ansari, MC Bunnell, JR Herdy, L Traxler, H Lee, ...
Cell reports 23 (9), 2550-2558, 2018
Repeat associated mechanisms of genome evolution and function revealed by the Mus caroli and Mus pahari genomes
D Thybert, M Roller, FCP Navarro, I Fiddes, I Streeter, C Feig, ...
Genome research 28 (4), 448-459, 2018
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